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Sequencing and analyzing complete mitochondrial genome of Anser cygnoides (Anserini: Anserinae).

ABSTRACT: The complete mitogenome sequence of Anser cygnoides was determined and compared with those previously released. The whole mitogenome was 16,740?bp, with 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 putative non-coding region (1178?bp). The overall nucleotide composition was 30.2%, 32.0%, 15.1%, and 22.7% for A, C, G, and T, respectively. Phylogenetic analyses strongly supported two clades in Anserini and demonstrated that A. cygnoides is not monophylogenetic. This division of A. cygnoides indicates that more research is necessary to clarify phylogenetic relationships for A. cygnoides and determine how they relate to morphological traits.

SUBMITTER: Lee MY

PROVIDER: S-EPMC7800209 | biostudies-literature | 2017 Apr

REPOSITORIES: biostudies-literature

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Sequencing and analyzing complete mitochondrial genome of Anser cygnoides (Anserini: Anserinae).

Lee Mu-Yeong MY Jeon Hey Sook HS Choi Yu-Seong YS Joo Sungbae S An Junghwa J

Mitochondrial DNA. Part B, Resources 20170421 1

The complete mitogenome sequence of Anser cygnoides was determined and compared with those previously released. The whole mitogenome was 16,740 bp, with 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 putative non-coding region (1178 bp). The overall nucleotide composition was 30.2%, 32.0%, 15.1%, and 22.7% for A, C, G, and T, respectively. Phylogenetic analyses strongly supported two clades in Anserini and demonstrated that A. cygnoides is not m ...[more]

PMID: 33473778

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Project description:BackgroundRecent functional studies have demonstrated that the microRNAs (miRNAs) play critical roles in ovarian gonadal development, steroidogenesis, apoptosis, and ovulation in mammals. However, little is known about the involvement of miRNAs in the ovarian function of fowl. The goose (Anas cygnoides) is a commercially important food that is cultivated widely in China but the goose industry has been hampered by high broodiness and poor egg laying performance, which are influenced by ovarian function.Methodology/principal findingsIn this study, the miRNA transcriptomes of ovaries from laying and broody geese were profiled using Solexa deep sequencing and bioinformatics was used to determine differential expression of the miRNAs. As a result, 11,350,396 and 9,890,887 clean reads were obtained in laying and broodiness goose, respectively, and 1,328 conserved known miRNAs and 22 novel potential miRNA candidates were identified. A total of 353 conserved microRNAs were significantly differentially expressed between laying and broody ovaries. Compared with miRNA expression in the laying ovary, 127 miRNAs were up-regulated and 126 miRNAs were down-regulated in the ovary of broody birds. A subset of the differentially expressed miRNAs (G-miR-320, G-miR-202, G-miR-146, and G-miR-143*) were validated using real-time quantitative PCR. In addition, 130,458 annotated mRNA transcripts were identified as putative target genes. Gene ontology annotation and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis suggested that the differentially expressed miRNAs are involved in ovarian function, including hormone secretion, reproduction processes and so on.ConclusionsThe present study provides the first global miRNA transcriptome data in A. cygnoides and identifies novel and known miRNAs that are differentially expressed between the ovaries of laying and broody geese. These findings contribute to our understanding of the functional involvement of miRNAs in the broody period of goose.

Dataset Information

Sequencing and analyzing complete mitochondrial genome of Anser cygnoides (Anserini: Anserinae).

Publications

Sequencing and analyzing complete mitochondrial genome of <i>Anser cygnoides</i> (Anserini: Anserinae).

Similar Datasets

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