Browse
Submit Data
Databases
API
Help

Dataset Information

28 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Pareuchiloglanis gongshanensis (Siluriformes, Sisoridae, Pareuchiloglanis): genome characterization and phylogenetic analysis.

ABSTRACT: Pareuchiloglanis gongshanensis, a small-sized benthic fish, distributed in southwest China. In the present study, the complete mitochondrial genome of P. gongshanensis was sequenced to be 16?588 bp in length, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, a control region and the origin of the light strand replication. The overall nucleotide composition was 30.70% A, 24.11% T, 29.16% C and 16.02% G, with an A?+?T bias of 54.82%. The gene composition and the structural arrangement of the P. gongshanensis complete mitochondrial DNA were identical to most of the other vertebrates. This will provide a useful tool for understanding the genetic diversity, population structure and conservation status of P. gongshanensis in the future.

SUBMITTER: Li B

PROVIDER: S-EPMC7800246 | biostudies-literature | 2016 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Pareuchiloglanis gongshanensis (Siluriformes, Sisoridae, Pareuchiloglanis): genome characterization and phylogenetic analysis.

Li Bo B Tian Zhifu Z Qin Ya Y Hao Meng M Zhang Jiabo J

Mitochondrial DNA. Part B, Resources 20160205 1

Pareuchiloglanis gongshanensis, a small-sized benthic fish, distributed in southwest China. In the present study, the complete mitochondrial genome of P. gongshanensis was sequenced to be 16 588 bp in length, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, a control region and the origin of the light strand replication. The overall nucleotide composition was 30.70% A, 24.11% T, 29.16% C and 16.02% G, with an A + T bias of 54.82%. The gene compositio ...[more]

PMID: 33490387

Similar Datasets

The complete mitogenome of Pareuchiloglanis sichuanensis (Siluriformes: Sisoridae).

Project description:Pareuchiloglanis sichuanensis is an endemic fish species in the upper reaches of the Yangtze River. In the present study, the complete mitochondrial genome of P. sichuanensis was analyzed. The mitochondrial genome, consisting of 16,774 base pairs (bp), included 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a non-coding control region. The phylogenetic tree showed that P. sichuanensis was closely related to P. anteanalis. These results provid the useful information for further studies on taxonomic status, molecular systematics, and stock evaluation.

| S-EPMC8462859 | biostudies-literature

The complete mitochondrial genome of Glyptothorax cavia (Siluriformes, Sisoridae, Glyptothorax): genome characterization and phylogenetic analysis.

Project description:Glyptothorax cavia, a small-sized benthic fish, distributed in southwest China. In the present study, the complete mitochondrial genome of G. cavia was sequenced to be 16,529?bp in length, including 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, a control region, and the origin of the light strand replication. The overall nucleotide composition was 31.15% A, 25.86% T, 27.64% C, and 15.35% G, with an A?+?T bias of 57.01%. The gene composition and the structural arrangement of the G. cavia complete mtDNA were identical to most of the other vertebrates. This will provide a useful tool for understanding the genetic diversity, population structure, and conservation status of G. cavia in the future.

| S-EPMC7800425 | biostudies-literature

The complete mitochondrial genome of Glyptothorax zainaensis (Siluriformes, Sisoridae, Glyptothorax): genome characterization and phylogenetic analysis.

Project description:Glyptothorax zainaensis, a small-sized benthic fish which mainly distributes in the Nujiang River, Lancangjiang river and their tributaries in China. In the present study, the complete mitochondrial genome of G. zainaensis was sequenced to be 16 537 bp in length, including 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, a control region and the origin of the light strand replication. The overall nucleotide composition was 31.17% A, 25.95% T, 27.48% C and 15.40% G, with an A + T bias of 57.13%. The gene composition and the structural arrangement of the G. zainaensis complete mitochondrial DNA were identical to most of the other vertebrates. This will provide a useful tool for understanding the genetic diversity, population structure and conservation status of G. zainaensis in the future.

| S-EPMC7800947 | biostudies-literature

The complete mitogenome and phylogeny analysis of Pareuchiloglanis longicauda (Yue, 981) (Siluriformes: Sisoridae).

Project description:Pareuchiloglanis longicauda, a Sisorid fish that is distributed in the upper Pearl River. In this study, the complete mitogenome of P. longicauda was sequenced using traditional Sanger sequencing approach. The 16,588 bp genome was consisted of 2 rRNAs, 22tRNAs, 13 protein-coding genes (PCGs) and 1 control region. The 13 PCGs started with a traditional ATG and end with stop codon TAA, TAG, TGA, TA or a single T base. Phylogenetic analysis based on 13 PCGs from 22 species using maximum-likelihood method produced three major clades (Clade I, II and III). Unexpectedly, our mitogenome exhibited only 92.12% identity to the previously published one (GenBank accession no. KP872693) with differences mainly located in the gene region. Furthermore, Pareuchiloglanis did not form a monophyletic genus and P. longicauda had the closest relationship with P. macrotrema. The result suggested that more complete mitogenomes are needed to reveal the phylogenetic placement of Pareuchiloglanis in the family Sisoridae.

| S-EPMC8635575 | biostudies-literature

The complete mitochondrial genome of Pareuchiloglanis myzostoma (Teleostei, Siluriformes).

Project description:Pareuchiloglanis myzostoma is a key-listed protected indigenous fish species in Nujiang, Yunnan, China. In this study, we firstly reported the complete mitochondrial genome of P. myzostoma, which was 16,584 bp in length, containing 13 protein-coding genes, 22 transfer RNAs (tRNAs), 2 ribosomal RNA genes (rRNAs), and a non-coding control region (D-loop). The overall base composition of P. myzostoma was 30.7% for A, 24.2% for T, 16.0% for G, and 29.1% for C. Phylogenetic analysis showed that all Sisoridae species clustered together formed a monophyletic group. This work would provide a set of useful data on further molecular evolution studies of this precious species.

| S-EPMC7707270 | biostudies-literature

The complete mitogenome of Glyptothorax deqinensis (Siluriformes: Sisoridae).

Project description:Glyptothorax deqinensis is a small endangered Sisoridae fish mainly distributed in the southwest of China. In the present study, the complete mitochondrial genome of G. deqinensis was firstly sequenced. The total length of the G. deqinensis mitogenome is 16,542 bp, including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and a control region. Among these genes, 28 are encoded by the H-strand and 9 by the L-strand. The information mitogenome obtained herein will provide useful tools for future studies on population genetic and phylogenetic analyses of this fish.

| S-EPMC7706984 | biostudies-literature

Complete mitochondrial genome and phylogenetic position of Pangasius sanitwongsei (Siluriformes: Pangasiidae).

Project description:In this study, the complete mitochondrial genome of Pangasius sanitwongsei was firstly reported and analyzed. It had a double-stand DNA molecule with 16536 bp in length, consisting of 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and one control region. The structural organization and gene order was similar to other bony fishes. The complete mitochondrial genome of P. sanitwongsei provided in this work would be helpful for further research on phylogenetics and conservation genetics of the Siluriformes and other orders.

| S-EPMC7748851 | biostudies-literature

Complete mitochondrial genome of Schizothorax gongshanensis (Cypriniformes: Cyprinidae).

Project description:In this study, the complete mitochondrial DNA of Schizothorax gongshanensis was determined. The complete genome is 16,591?bp in length which contains 13 protein-coding genes, 22 transfer RNA genes, 2 rRNA genes, an origin of light-strand replication (OL) and a control region (D-Loop). The complete mtDNA sequence of S. gongshanensis provides a useful genetic marker for the studies on molecular systematics, population genetics and stock assessment.

| S-EPMC7800125 | biostudies-literature

The complete mitochondrial genome of Silurus asotus (Siluriformes: Siluridae: Silurus) and its phylogenetic analysis.

Project description:Silurus asotus is a widely distributed species, and mainly lives in the middle and lower layers of rivers, lakes, and reservoirs. In this study, we report the complete mitochondrial genome of S. asotus, which was 17,385 bp in length, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. Phylogenetic analyses indicated that S. asotus has a close relationship with S. soldatovi. This research work will provide some useful information on further molecular evolution studies of Siluridae species.

| S-EPMC7687597 | biostudies-literature

The complete mitochondrial genome of Tachysurus virgatus (Oshima 1926) (Siluriformes: Bagridae) and its phylogenetic status.

Project description:Tachysurus virgatus (Oshima 1926) is a small and benthic Bagridae species that resides in the Southern China and Viet Nam. Currently, limited published genetic information has hindered our understanding of this species. In the current study, the complete mitochondrial genome of T. virgatus was determined using next generation sequencing, which was 16,524 base pairs (bp) in length and identical to most genomes of bony fishes. Phylogenetic analyses supported four clades (I, II, III, and IV) occurring in the family Bagridae and T. virgatus formed an independent clade that was sister to the clades I and II.

| S-EPMC7782150 | biostudies-literature