Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Characterization of the complete mitochondrial genome of Diodon liturosus with phylogenetic consideration.

ABSTRACT: In this study, the complete mitochondrial genome of Diodon liturosus was sequenced and analyzed. The mitochondrial genome is 16,512?bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and composition of D. liturosus mitochondrial genome was similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 28.69% of A, 31.64% of C, 23.66% of T and 16% of G. The NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes were localized in the light strand, and all other mitochondrial genes were encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood method revealed that D. liturosus has the closer relationship to the Diodon holocanthus.

SUBMITTER: Ma J

PROVIDER: S-EPMC7800658 | biostudies-literature | 2017 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Characterization of the complete mitochondrial genome of Diodon liturosus with phylogenetic consideration.

Ma Jun J Hong Guang G He Chao C Chen Yan Y Chen Huapu H Huang Hai H

Mitochondrial DNA. Part B, Resources 20170530 1

In this study, the complete mitochondrial genome of Diodon liturosus was sequenced and analyzed. The mitochondrial genome is 16,512 bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and composition of D. liturosus mitochondrial genome was similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 28.69% of A, 31.64% of C, 23.66% of T and 16% of G. The NADH dehydro ...[more]

PMID: 33473815

Similar Datasets

Characterization of the complete mitochondrial genome of Diodon hystrix with phylogenetic consideration.

Project description:In this study, the complete mitochondrial genome of Diodon hystrix was sequenced and analyzed. The mitochondrial genome is 16,512?bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and composition of D. hystrix mitochondrial genome was similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 28.69% of A, 31.64% of C, 23.66% of T and 16% of G. The NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes were localized in the light strand, and all other mitochondrial genes were encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method revealed that D. hystrix has the closer relationship to the Diodon holocanthus.

| S-EPMC7799933 | biostudies-literature

The complete mitochondrial genome characterization of Paratrypauchen microcephalus (Gobiiformes: Oxudercidae) and phylogenetic consideration.

Project description:The complete mitochondrial genome of Paratrypauchen microcephalus (Gobiiformes: Oxudercidae) was completely sequenced by high throughput sequencing method. The complete mitochondrial genome was 16,552?bp in length, consisted of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, a putative control region (CR), and an origin of replication on the light-strand (OL). The base composition values for the mitochondrial genome were 29.1%, 27.6%, 15.7%, and 27.6% for A, C, G, and T, respectively. The gene arrangement is identical to those in typical fishes. Phylogenetic tree based on 13 protein-coding genes shows that P. microcephalus has a close phylogenetic relationship with genus Trypauchen and belongs to Oxudercidae.

| S-EPMC7799540 | biostudies-literature

Characterization of the complete mitochondrial genome of Priacanthus tayenus (Perciformes: Priacanthidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome of the Priacanthus tayenus was sequenced and analyzed in this study. The mitochondrial genome is 16,866?bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and the composition of P. tayenus mitochondrial genome were similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 30.91% of G, 26. 35% of T, 25.61% of A and 17.13% of C. The NADH dehydrogenase subunit 6 (ND6) and eight tRNA genes were localized in the light strand, and all other mitochondrial genes were encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method revealed that the P. tayenus showed the closer relationship to the Sciaenops ocellatus.

| S-EPMC7871866 | biostudies-literature

Complete mitochondrial genome of Rivularia auriculata (Gastropoda, Viviparidae) with phylogenetic consideration.

Project description:Complete mitochondrial genome sequence of Rivularia auriculata has a circular genome of 16,552?bp, which is comprised 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The nucleotide composition of the light strand is 43.16% of A, 26.78% of T, 20.18% of C, and 9.88% of G. All genes are encoded on the heavy strand except seven tRNA genes (Met, Tyr, Cys, Trp, Gln, Gly, and Glu) on the light strand. All the protein-coding genes start with ATC initiation codon except ND4 starts with GTG, and two types of inferred termination codons are TAA and TAG. There are 26 intergenic spacers and 4 gene overlaps. It is indicated that R. auriculata has closer genetic relationship with Viviparus chui (88.64% nucleotide sequence identity between them) than the other snail species.

| S-EPMC7707688 | biostudies-literature

Complete mitochondrial genome of Lepidotrigla alata (Osteichthyes: Triglidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome of Lepidotrigla alata was sequenced in this study. The genome sequence is 16,512 bp in length, comprising 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and one control region. Overall base composition is 26.46% A, 25.05% T, 17.22% G, and 31.27% C. Phylogenetic analysis indicated that L. alata was close to L. guentheri and L. microptera, and each genus in the family Triglidae was monophyletic. This study can provide valuable information for future evolutionary studies on L. alata and Triglidae.

| S-EPMC9262353 | biostudies-literature

The complete mitochondrial genome of Acanthopagrus schlegelii (Perciformes: Sparidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome of the Acanthopagrus schlegelii was presented in this study. The mitochondrial genome is 16,798?bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a control region. The gene order and composition of A. schlegelii mitochondrial genome was similar to that of most other vertebrates. The nucleotide compositions of the light strand in descending order is 28.04% of T, 27.94% of G, 27.87% of A and 16.15% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes, all other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood method shown that he A. schlegelii has the closer relationship to the Rhabdosargus sarba in the phylogenetic relationship.

| S-EPMC7800553 | biostudies-literature

The complete mitochondrial genome of Chionodraco hamatus (Notothenioidei: Channichthyidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome of Chionodraco hamatus was obtained, which was 17?457?bp in length. This genome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a putative control region. Of the 37 genes, 28 were encoded by heavy strand, while 9 were encoded by light strand. Overall base composition of mitogenome is estimated to be 26.38% for A, 17.44% for G, 26.00% for T, 30.18% for C, respectively, with a slight A?+?T bias (52.38%). The phylogenetic analysis based on 13 concatenated protein-coding genes suggested that C. hamatus as a sister species to Chionodraco myersi was clustered in family Chionodraco. The complete mitochondrial genome sequence of C. hamatus could provide a basic data for the studies on evolution for low temperature adaptability, population structure, molecular systematic, stock evaluation and conservation genetics.

| S-EPMC7800830 | biostudies-literature

The complete mitochondrial genome of Chionodraco rastrospinosus (Notothenioidei: Channichthyidae) with phylogenetic consideration.

Project description:In this study, the complete mitochondrial genome of Chionodraco rastrospinosus was obtained, which was 17598?bp including 2 ribosomal RNAs, 13 protein-coding genes, 22 transfer RNAs, and a non-coding control region. The length of D-loop was 1332?bp and its contents of A, T, C, and G were 30.3%, 27.6%, 26.8%, and 15.3%. The complete mtDNA sequences of C. rastrospinosus and other 14 species were used to reconstruct the phylogenetic tree, suggested that C. rastrospinosus was closest to two species of Chionodraco. The study would provide a basic data for further research on population structure, conservation genetics and molecular evolution of C. rastrospinosus.

| S-EPMC7800282 | biostudies-literature

The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration.

Project description:In this study, the complete mitochondrial genome of Neopagetopsis ionah was obtained, which was 17,634?bp including two ribosomal RNAs, 13 protein-coding genes, 22 transfer RNAs, and a non-coding control region. In 13 protein-coding genes, there types of initiation codon (ATC, ATG, and GTG) and four types of stop codons (TAA, TAG, TA, and T) were identified. Among the 22 transfer RNAs, eight tRNAs were encoded by L-strand. The length of D-loop was 1519?bp and its contents of A, T, C, and G were 26.9%, 27.6%, 17.5%, and 30%, respectively. The complete mtDNA sequences of N. ionah and other 13 species were used to reconstruct the phylogenetic tree suggested that N. ionah was closest to some species of Channichthyidae. The study would provide a basic data for further research on population structure, conservation genetics and molecular evolution of N. ionah.

| S-EPMC7801004 | biostudies-literature

Complete mitochondrial genome of the Acentrogobius pflaumii (Gobiiformes, Gobiidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome sequence of Acentrogobius pflaumii was sequenced. It was 16,515-nucleotide in length and consisted of 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and two non-coding regions (L-strand replication origin and control region), showing conserved gene arrangement with most vertebrates. The phylogenetic analysis based on complete mitochondrial genome of A. pflaumii as well as other Gobiiformes species showed that A. pflaumii had close relationships with Amoya chusanensis. This study will provide useful genetic informatin for future phylogenetic and taxonomic classification of gobiiformes.

| S-EPMC7748747 | biostudies-literature