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The complete mitochondrial genome sequence of the corn planthopper, Peregrinus maidis (Hemiptera: Fulgoroidea).

ABSTRACT: In this study, we analyzed the complete mitochondrial genome sequence of the corn planthopper, Peregrinus maidis. The complete mitogenome sequence of P. maidis was observed to be a circular molecule 16,279?bp long and consisting of 13 protein-coding genes (PCG), 2 ribosomal RNA (rRNA) genes and 22 transfer RNA (tRNA) genes (GenBank accession no. MG049917). The nucleotide composition is biased toward adenine and thymine (77.8% A?+?T). The A?+?T-rich region was found between rrnS and trnI, and this entire region was 1596?bp long.

SUBMITTER: Huang YX

PROVIDER: S-EPMC7800928 | biostudies-literature | 2017 Nov

REPOSITORIES: biostudies-literature

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The complete mitochondrial genome sequence of the corn planthopper, Peregrinus maidis (Hemiptera: Fulgoroidea).

Huang Yi-Xin YX Qin Dao-Zheng DZ

Mitochondrial DNA. Part B, Resources 20171107 2

In this study, we analyzed the complete mitochondrial genome sequence of the corn planthopper, Peregrinus maidis. The complete mitogenome sequence of P. maidis was observed to be a circular molecule 16,279 bp long and consisting of 13 protein-coding genes (PCG), 2 ribosomal RNA (rRNA) genes and 22 transfer RNA (tRNA) genes (GenBank accession no. MG049917). The nucleotide composition is biased toward adenine and thymine (77.8% A + T). The A + T-rich region was found between rrnS< ...[more]

PMID: 33473978

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Project description:The corn planthopper, Peregrinus maidis, is a major pest of agronomically-important crops. Peregrinus maidis has a large geographical distribution and transmits Maize mosaic rhabdovirus (MMV) and Maize stripe tenuivirus (MSpV). The objective of this study was to develop effective RNAi methods for P. maidis. Vacuolar-ATPase (V-ATPase) is an essential enzyme for hydrolysis of ATP and for transport of protons out of cells thereby maintaining membrane ion balance, and it has been demonstrated to be an efficacious target for RNAi in other insects. In this study, two genes encoding subunits of P. maidis V-ATPase (V-ATPase B and V-ATPase D) were chosen as RNAi target genes. The open reading frames of V-ATPase B and D were generated and used for constructing dsRNA fragments. Experiments were conducted using oral delivery and microinjection of V-ATPase B and V-ATPase D dsRNA to investigate the effectiveness of RNAi in P. maidis. Real-time quantitative reverse transcriptase-PCR (qRT-PCR) analysis indicated that microinjection of V-ATPase dsRNA led to a minimum reduction of 27-fold in the normalized abundance of V-ATPase transcripts two days post injection, while ingestion of dsRNA resulted in a two-fold reduction after six days of feeding. While both methods of dsRNA delivery resulted in knockdown of target transcripts, the injection method was more rapid and effective. The reduction in V-ATPase transcript abundance resulted in observable phenotypes. Specifically, the development of nymphs injected with 200 ng of either V-ATPase B or D dsRNA was impaired, resulting in higher mortality and lower fecundity than control insects injected with GFP dsRNA. Microscopic examination of these insects revealed that female reproductive organs did not develop normally. The successful development of RNAi in P. maidis to target specific genes will enable the development of new insect control strategies and functional analysis of vital genes and genes associated with interactions between P. maidis and MMV.

Project description:BACKGROUND:The corn leaf aphid (Rhopalosiphum maidis Fitch) is the most economically damaging aphid pest on maize (Zea mays), one of the world's most important grain crops. In addition to causing direct damage by removing photoassimilates, R. maidis transmits several destructive maize viruses, including maize yellow dwarf virus, barley yellow dwarf virus, sugarcane mosaic virus, and cucumber mosaic virus. FINDINGS:The genome of a parthenogenetically reproducing R. maidis clone was assembled with a combination of Pacific Biosciences (207-fold coverage) and Illumina (83-fold coverage) sequencing. The 689 assembled contigs, which have an N50 size of 9.0 megabases (Mb) and a low level of heterozygosity, were clustered using Phase Genomics Hi-C interaction maps. Consistent with the commonly observed 2n = 8 karyotype of R. maidis, most of the contigs (473 spanning 321 Mb) were successfully oriented into 4 scaffolds. The genome assembly captured the full length of 95.8% of the core eukaryotic genes, indicating that it is highly complete. Repetitive sequences accounted for 21.2% of the assembly, and a total of 17,629 protein-coding genes were predicted with integrated evidence from ab initio and homology-based gene predictions and transcriptome sequences generated with both Pacific Biosciences and Illumina. An analysis of likely horizontally transferred genes identified 2 from bacteria, 7 from fungi, 2 from protozoa, and 9 from algae. Repeat elements, transposons, and genes encoding likely detoxification enzymes (cytochrome P450s, glutathione S-transferases, carboxylesterases, uridine diphosphate-glucosyltransferases, and ABC transporters) were identified in the genome sequence. Other than Buchnera aphidicola (642,929 base pairs, 602 genes), no endosymbiont bacteria were found in R. maidis. CONCLUSIONS:A high-quality R. maidis genome was assembled at the chromosome level. This genome sequence will enable further research related to ecological interactions, virus transmission, pesticide resistance, and other aspects of R. maidis biology. It also serves as a valuable resource for comparative investigation of other aphid species.

Dataset Information

The complete mitochondrial genome sequence of the corn planthopper, Peregrinus maidis (Hemiptera: Fulgoroidea).

Publications

The complete mitochondrial genome sequence of the corn planthopper, <i>Peregrinus maidis</i> (Hemiptera: Fulgoroidea).

Similar Datasets

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