Dataset Information

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals.

ABSTRACT:

Background

Early development of the gut microbiome is an essential part of neonate health in animals. It is unclear whether the acquisition of gut microbes is different between domesticated animals and their wild counterparts. In this study, fecal samples from ten domestic conventionally managed (DCM) Standardbred and ten semi-feral managed (SFM) Shetland-type pony foals and dams were compared using 16S rRNA sequencing to identify differences in the development of the foal hindgut microbiome related to time and management.

Results

Gut microbiome diversity of dams was lower than foals overall and within groups, and foals from both groups at Week 1 had less diverse gut microbiomes than subsequent weeks. The core microbiomes of SFM dams and foals had more taxa overall, and greater numbers of taxa within species groups when compared to DCM dams and foals. The gut microbiomes of SFM foals demonstrated enhanced diversity of key groups: Verrucomicrobia (RFP12), Ruminococcaceae, Fusobacterium spp., and Bacteroides spp., based on age and management. Lactic acid bacteria Lactobacillus spp. and other Lactobacillaceae genera were enriched only in DCM foals, specifically during their second and third week of life. Predicted microbiome functions estimated computationally suggested that SFM foals had higher mean sequence counts for taxa contributing to the digestion of lipids, simple and complex carbohydrates, and protein. DCM foal microbiomes were more similar to their dams in week five and six than were SFM foals at the same age.

Conclusions

This study demonstrates the impact of management on the development of the foal gut microbiome in the first 6?weeks of life. The higher numbers of taxa within and between bacterial groups found in SFM dams and foals suggests more diversity and functional redundancy in their gut microbiomes, which could lend greater stability and resiliency to these communities. The colonization of lactic acid bacteria in the early life of DCM foals suggests enrichment in response to the availability of dams' feed. Thus, management type is an important driver of gut microbiome establishment on horses, and we may look to semi-feral horses for guidance in defining a healthy gut microbiome for domestic horses.

SUBMITTER: Tavenner MK

PROVIDER: S-EPMC7807438 | biostudies-literature | 2020 Nov

REPOSITORIES: biostudies-literature

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Publications

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals.

Tavenner Meredith K MK McDonnell Sue M SM Biddle Amy S AS

Animal microbiome 20201123 1

<h4>Background</h4>Early development of the gut microbiome is an essential part of neonate health in animals. It is unclear whether the acquisition of gut microbes is different between domesticated animals and their wild counterparts. In this study, fecal samples from ten domestic conventionally managed (DCM) Standardbred and ten semi-feral managed (SFM) Shetland-type pony foals and dams were compared using 16S rRNA sequencing to identify differences in the development of the foal hindgut microb ...[more]

PMID: 33499959

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Project description:Agricultural intensification has led to drastic population declines in Europe's arable plant vegetation, and continuous monitoring is a prerequisite for assessing measures to increase and conserve remnant populations of endangered arable plant species. Unfortunately, strong variation in plot sizes and in-field locations makes comparison of current arable plant monitoring approaches difficult. This study compares different relevé approaches in conventionally managed arable fields in Northwest German farmland with respect to plant species detection success and time expenditure. We compared species detection rate and expenditure of time of six different relevé types in 45 conventionally managed arable fields (each 15 fields of wheat, maize, and rapeseed): field "Interior" plots (50 × 2 m); field edge plots: "Edge_30" (30 × 2 m), "Edge_50" (50 × 2 m), and "Edge_500" (500 × 1 m); "Subplots" (four dispersed plots of 5 × 1 m); and "Corner" plots (50 × 2 m). To determine species detection rate, the species richness recorded with a survey method was related to the field's total plant species number as estimated from a survey of the entire field edge zone. With a species detection rate of 8.3% (median), interior plots were inadequate for characterizing the field's arable plant vegetation. Edge_500 plots yielded the highest proportion of the field's arable plant species pool (75.6%, including taxa of conservation value), followed by "Corner" plots (45.8%) and "Sublots" (32.6%). Edge_50 and Edge_30 plots detected less than 25% of the field's species pool. The average time needed for a relevé was 20 min in Edge500 plots and 5-11 min in the other plot types. We suggest implementing Edge_500 plots as a standard monitoring approach in conventionally managed farmland due to its favorable ratio of detection success to expenditure of time. Our findings should be compared to methodological studies conducted in other regions, in different farmland management systems, and in landscapes of variable complexities.

Dataset Information

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals.

Background

Results

Conclusions

Publications

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals.

Similar Datasets

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