Dataset Information

Phase unwrapping with a rapid opensource minimum spanning tree algorithm (ROMEO).

ABSTRACT:

Purpose

To develop a rapid and accurate MRI phase-unwrapping technique for challenging phase topographies encountered at high magnetic fields, around metal implants, or postoperative cavities, which is sufficiently fast to be applied to large-group studies including Quantitative Susceptibility Mapping and functional MRI (with phase-based distortion correction).

Methods

The proposed path-following phase-unwrapping algorithm, ROMEO, estimates the coherence of the signal both in space-using MRI magnitude and phase information-and over time, assuming approximately linear temporal phase evolution. This information is combined to form a quality map that guides the unwrapping along a 3D path through the object using a computationally efficient minimum spanning tree algorithm. ROMEO was tested against the two most commonly used exact phase-unwrapping methods, PRELUDE and BEST PATH, in simulated topographies and at several field strengths: in 3T and 7T in vivo human head images and 9.4T ex vivo rat head images.

Results

ROMEO was more reliable than PRELUDE and BEST PATH, yielding unwrapping results with excellent temporal stability for multi-echo or multi-time-point data. It does not require image masking and delivers results within seconds, even in large, highly wrapped multi-echo data sets (eg, 9 seconds for a 7T head data set with 31 echoes and a 208 × 208 × 96 matrix size).

Conclusion

Overall, ROMEO was both faster and more accurate than PRELUDE and BEST PATH, delivering exact results within seconds, which is well below typical image acquisition times, enabling potential on-console application.

SUBMITTER: Dymerska B

PROVIDER: S-EPMC7821134 | biostudies-literature | 2021 Apr

REPOSITORIES: biostudies-literature

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Publications

Phase unwrapping with a rapid opensource minimum spanning tree algorithm (ROMEO).

Dymerska Barbara B Eckstein Korbinian K Bachrata Beata B Siow Bernard B Trattnig Siegfried S Shmueli Karin K Robinson Simon Daniel SD

Magnetic resonance in medicine 20201026 4

<h4>Purpose</h4>To develop a rapid and accurate MRI phase-unwrapping technique for challenging phase topographies encountered at high magnetic fields, around metal implants, or postoperative cavities, which is sufficiently fast to be applied to large-group studies including Quantitative Susceptibility Mapping and functional MRI (with phase-based distortion correction).<h4>Methods</h4>The proposed path-following phase-unwrapping algorithm, ROMEO, estimates the coherence of the signal both in spac ...[more]

PMID: 33104278

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Project description:The multi-frequency temporal phase unwrapping (MF-TPU) method, as a classical phase unwrapping algorithm for fringe projection techniques, has the ability to eliminate the phase ambiguities even while measuring spatially isolated scenes or the objects with discontinuous surfaces. For the simplest and most efficient case in MF-TPU, two groups of phase-shifting fringe patterns with different frequencies are used: the high-frequency one is applied for 3D reconstruction of the tested object and the unit-frequency one is used to assist phase unwrapping for the wrapped phase with high frequency. The final measurement precision or sensitivity is determined by the number of fringes used within the high-frequency pattern, under the precondition that its absolute phase can be successfully recovered without any fringe order errors. However, due to the non-negligible noises and other error sources in actual measurement, the frequency of the high-frequency fringes is generally restricted to about 16, resulting in limited measurement accuracy. On the other hand, using additional intermediate sets of fringe patterns can unwrap the phase with higher frequency, but at the expense of a prolonged pattern sequence. With recent developments and advancements of machine learning for computer vision and computational imaging, it can be demonstrated in this work that deep learning techniques can automatically realize TPU through supervised learning, as called deep learning-based temporal phase unwrapping (DL-TPU), which can substantially improve the unwrapping reliability compared with MF-TPU even under different types of error sources, e.g., intensity noise, low fringe modulation, projector nonlinearity, and motion artifacts. Furthermore, as far as we know, our method was demonstrated experimentally that the high-frequency phase with 64 periods can be directly and reliably unwrapped from one unit-frequency phase using DL-TPU. These results highlight that challenging issues in optical metrology can be potentially overcome through machine learning, opening new avenues to design powerful and extremely accurate high-speed 3D imaging systems ubiquitous in nowadays science, industry, and multimedia.

Dataset Information

Phase unwrapping with a rapid opensource minimum spanning tree algorithm (ROMEO).

Purpose

Methods

Results

Conclusion

Publications

Phase unwrapping with a rapid opensource minimum spanning tree algorithm (ROMEO).

Similar Datasets

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