Unknown

Dataset Information

0

Tidybulk: an R tidy framework for modular transcriptomic data analysis.


ABSTRACT: Recently, efforts have been made toward the harmonization of transcriptomic data structures and workflows using the concept of data tidiness, to facilitate modularisation. We present tidybulk, a modular framework for bulk transcriptional analyses that introduces a tidy transcriptomic data structure paradigm and analysis grammar. Tidybulk covers a wide variety of analysis procedures and integrates a large ecosystem of publicly available analysis algorithms under a common framework. Tidybulk decreases coding burden, facilitates reproducibility, increases efficiency for expert users, lowers the learning curve for inexperienced users, and bridges transcriptional data analysis with the tidyverse. Tidybulk is available at R/Bioconductor bioconductor.org/packages/tidybulk .

SUBMITTER: Mangiola S 

PROVIDER: S-EPMC7821481 | biostudies-literature | 2021 Jan

REPOSITORIES: biostudies-literature

altmetric image

Publications

tidybulk: an R tidy framework for modular transcriptomic data analysis.

Mangiola Stefano S   Molania Ramyar R   Dong Ruining R   Doyle Maria A MA   Papenfuss Anthony T AT  

Genome biology 20210122 1


Recently, efforts have been made toward the harmonization of transcriptomic data structures and workflows using the concept of data tidiness, to facilitate modularisation. We present tidybulk, a modular framework for bulk transcriptional analyses that introduces a tidy transcriptomic data structure paradigm and analysis grammar. Tidybulk covers a wide variety of analysis procedures and integrates a large ecosystem of publicly available analysis algorithms under a common framework. Tidybulk decre  ...[more]

Similar Datasets

| S-EPMC3834824 | biostudies-other
2008-08-11 | E-GEOD-11908 | biostudies-arrayexpress
2008-08-11 | GSE11908 | GEO
| S-EPMC3018817 | biostudies-literature
2008-08-11 | GSE11907 | GEO
2008-08-11 | GSE11909 | GEO
| S-EPMC3218660 | biostudies-literature
| S-EPMC2918584 | biostudies-literature
| S-BSST307 | biostudies-other
| S-EPMC2727981 | biostudies-literature