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The Nature of Chalcogen-Bonding-Type Tellurium-Nitrogen Interactions: A First Experimental Structure from the Gas Phase.

ABSTRACT: (C₆ F₅ )Te(CH₂ )₃ NMe₂ (1), a perfluorophenyltellurium derivative capable of forming intramolecular N⋅⋅⋅Te interactions, was prepared and characterized. The donor-free reference substance (C₆ F₅ )TeMe (2) and the unsupported adduct (C₆ F₅ )(Me)Te⋅NMe₂ Et (2 b) were studied in parallel. Molecular structures of 1, 2 and 2 b were determined by single-crystal X-ray diffraction and for 1 and 2 by gas-phase electron diffraction. The structure of 1 shows N⋅⋅⋅Te distances of 2.639(1) Å (solid) and 2.92(3) Å (gas). Ab initio plus NBO and QTAIM calculations show significant charge transfer effects within the N⋅⋅⋅Te interactions and indicate σ-hole interactions.

SUBMITTER: Glodde T

PROVIDER: S-EPMC7839716 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Corrigendum: The Nature of Chalcogen-Bonding-Type Tellurium-Nitrogen Interactions: A First Experimental Structure from the Gas Phase.

Project description: Not available

| S-EPMC8173641 | biostudies-literature

Reply to a Comment on "The Nature of Chalcogen-Bonding-Type Tellurium-Nitrogen Interactions".

Project description:We reply to the comment by J.-M. Mewes, A. Hansen and S. Grimme (MHG), who challenged the accuracy of our re value for the N⋅⋅⋅Te distance in (C6 F5 )Te(CH2 )3 NMe2 determined by gas electron diffraction (GED). We conclusively demonstrate that MHG's quoted reference calculations are less accurate than they claim for solid state and gas phase. We show by higher level calculations, that we did not miss substantial contributions from open-chain conformers. Refinements on simulated scattering data show that such contributions would have had only an almost negligible effect on re (N⋅⋅⋅Te). MHG suggested the use of a H0-tuned GFN method for calculating vibrational corrections ra -re , but this did not change these values substantially. Alternative amplitude calculations using higher level analytic harmonic and numeric cubic force fields (PBE0-D3BJ/def2-TZVP) yield a GED value for re (N⋅⋅⋅Te)=2.852(25) Å that is well within the experimental error of our original value 2.918(31) Å but far from the 2.67(8) Å predicted by MHG. A now improved error estimation accounts for inaccuracies in the calculated auxiliary values. The gas/solid difference of the weak N⋅⋅⋅Te interaction is in a realistic range compared to other systems involving weak chemical interactions.

| S-EPMC8251573 | biostudies-literature

Comment on "The Nature of Chalcogen-Bonding-Type Tellurium-Nitrogen Interactions": Fixing the Description of Finite-Temperature Effects Restores the Agreement Between Experiment and Theory.

Project description:Mitzel and co-workers recently presented an intriguing molecule displaying a tellurium-nitrogen interaction. Structural data obtained in the solid and in gas phase indicated a large increase of the Te-N equilibrium distance re from 2.64 to 2.92 Å, respectively. Although some DFT calculations appear to support the large re in gas phase, we argue that the lions share of the increase is due to an incomplete description of finite-temperature effects in the back-corrected experimental data. This hypothesis is based on high-level coupled-cluster (CC) and periodic DFT calculations, which consistently point towards a much smaller re in the isolated molecule. Further support comes through MD simulations with a tuned GFN2-xTB Hamiltonian: Calibrated against a CC reference, these show a six-times larger influence of temperature than with the originally used GFN1-xTB. Taking this into account, the back-corrected re in gas phase becomes 2.67±0.08 Å, in good agreement with high-level CC theory and most DFT methods.

| S-EPMC8252449 | biostudies-literature

Carbonyl Activation by Selenium- and Tellurium-Based Chalcogen Bonding in a Michael Addition Reaction.

Project description:In the last years the use of chalcogen bonding-the noncovalent interaction involving electrophilic chalcogen centers-in noncovalent organocatalysis has received increased interest, particularly regarding the use of intermolecular Lewis acids. Herein, we present the first use of tellurium-based catalysts for the activation of a carbonyl compound (and only the second such activation by chalcogen bonding in general). As benchmark reaction, the Michael-type addition between trans-crotonophenone and 1-methylindole (and its derivatives) was investigated in the presence of various catalyst candidates. Whereas non-chalcogen-bonding reference compounds were inactive, strong rate accelerations of up to 1000 could be achieved by bidentate triazolium-based chalcogen bond donors, with product yields of >90?% within 2?h of reaction time. Organotellurium derivatives were markedly more active than their selenium and sulphur analogues and non-coordinating counterions like BArF 4 provide the strongest dicationic catalysts.

| S-EPMC7027547 | biostudies-literature

Redox-controlled chalcogen-bonding at tellurium: impact on Lewis acidity and chloride anion transport properties.

Project description:Our interests in the chemistry of atypical main group Lewis acids have led us to devise strategies that augment the affinity of chalcogen-bond donors for anionic guests. In this study, we describe the oxidative methylation of diaryltellurides as one such strategy along with its application to the synthesis of [Mes(C6F5)TeMe]+ and [(C6F5)2TeMe]+ starting from Mes(C6F5)Te and (C6F5)2Te, respectively. These new telluronium cations have been evaluated for their ability to complex and transport chloride anions across phospholipid bilayers. These studies show that, when compared to their neutral Te(ii) precursors, these Te(iv) cations display both higher Lewis acidity and transport activity. The positive attributes of these telluronium cations, which originate from a lowering of the tellurium-centered σ* orbitals and a deepening of the associated σ-holes, demonstrate that the redox state of the main group element provides a convenient handle over its chalcogen-bonding properties.

| S-EPMC8159482 | biostudies-literature

Does Oxygen Feature Chalcogen Bonding?

Project description:Using the second-order Møller-Plesset perturbation theory (MP2), together with Dunning's all-electron correlation consistent basis set aug-cc-pVTZ, we show that the covalently bound oxygen atom present in a series of 21 prototypical monomer molecules examined does conceive a positive (or a negative) ?-hole. A ?-hole, in general, is an electron density-deficient region on a bound atom M along the outer extension of the R-M covalent bond, where R is the reminder part of the molecule, and M is the main group atom covalently bonded to R. We have also examined some exemplar 1:1 binary complexes that are formed between five randomly chosen monomers of the above series and the nitrogen- and oxygen-containing Lewis bases in N2, PN, NH3, and OH2. We show that the O-centered positive ?-hole in the selected monomers has the ability to form the chalcogen bonding interaction, and this is when the ?-hole on O is placed in the close proximity of the negative site in the partner molecule. Although the interaction energy and the various other 12 characteristics revealed from this study indicate the presence of any weakly bound interaction between the monomers in the six complexes, our result is strongly inconsistent with the general view that oxygen does not form a chalcogen-bonded interaction.

| S-EPMC6749412 | biostudies-literature

The Nature of Strong Chalcogen Bonds Involving Chalcogen-Containing Heterocycles.

Project description:Chalcogen bonds are σ hole interactions and have been used in recent years as an alternative to hydrogen bonds. In general, the electrostatic potential at the chalcogen atom and orbital delocalization effects are made responsible for the orientation of the chalcogen bond. Here, we were able to show by means of SAPT calculations that neither the induction (orbital delocalization effects) nor the electrostatic term is causing the spatial orientation of strong chalcogen bonds in tellurium-containing aromatics. Instead, steric interactions (Pauli repulsion) are responsible for the orientation. Against chemical intuition the dispersion energies of the examined tellurium-containing aromatics are far less important for the net attractive forces compared to the energies in the corresponding sulfur and selenium compounds. Our results underline the importance of often overlooked steric interactions (Pauli repulsion) in conformational control of σ hole interactions.

| S-EPMC7693109 | biostudies-literature

Polymorphism, Weak Interactions and Phase Transitions in Chalcogen-Phosphorus Heterocycles.

Project description:A series of P-E-containing heterocycles (E=chalcogen) with aromatic backbones were synthesised and characterised by single-crystal and powder XRD, microanalysis and mass spectrometry. Solution- and solid-state 31 P and 77 Se NMR spectroscopy revealed significant differences between the NMR parameters in solution and in the solid state, related to conformational changes in the molecules. Many compounds were shown to exhibit a number of different polymorphic structures (identified by single-crystal XRD), although the bulk material studied by solid-state NMR spectroscopy often contained just one major polymorph. For the unoxidised heterocycles, the presence of weak intermolecular J couplings was also investigated by DFT calculations.

| S-EPMC6099295 | biostudies-literature

Supramolecular macrocycles reversibly assembled by Te(…)O chalcogen bonding.

Project description:Organic molecules with heavy main-group elements frequently form supramolecular links to electron-rich centres. One particular case of such interactions is halogen bonding. Most studies of this phenomenon have been concerned with either dimers or infinitely extended structures (polymers and lattices) but well-defined cyclic structures remain elusive. Here we present oligomeric aggregates of heterocycles that are linked by chalcogen-centered interactions and behave as genuine macrocyclic species. The molecules of 3-methyl-5-phenyl-1,2-tellurazole 2-oxide assemble a variety of supramolecular aggregates that includes cyclic tetramers and hexamers, as well as a helical polymer. In all these aggregates, the building blocks are connected by Te(…)O-N bridges. Nuclear magnetic resonance spectroscopic experiments demonstrate that the two types of annular aggregates are persistent in solution. These self-assembled structures form coordination complexes with transition-metal ions, act as fullerene receptors and host small molecules in a crystal.

| S-EPMC4838886 | biostudies-other

Chalcogen Bonding Catalysis of a Nitro-Michael Reaction.

Project description:Chalcogen bonding is the non-covalent interaction between Lewis acidic chalcogen substituents and Lewis bases. Herein, we present the first application of dicationic tellurium-based chalcogen bond donors in the nitro-Michael reaction between trans-?-nitrostyrene and indoles. This also constitutes the first activation of nitro derivatives by chalcogen bonding (and halogen bonding). The catalysts showed rate accelerations of more than a factor of 300 compared to strongly Lewis acidic hydrogen bond donors. Several comparison experiments, titrations, and DFT calculations support a chalcogen-bonding-based mode of activation of ?-nitrostyrene.

| S-EPMC6899570 | biostudies-literature

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