Dataset Information

A microbial gene catalog of anaerobic digestion from full-scale biogas plants.

ABSTRACT:

Background

Biogas production with anaerobic digestion (AD) is one of the most promising solutions for both renewable energy production and resolving the environmental problem caused by the worldwide increase in organic waste. However, the complex structure of the microbiome in AD is poorly understood.

Findings

In this study, we constructed a microbial gene catalog of AD (22,840,185 genes) based on 1,817 Gb metagenomic data derived from digestate samples of 56 full-scale biogas plants fed with diverse feedstocks. Among the gene catalog, 73.63% and 2.32% of genes were taxonomically annotated to Bacteria and Archaea, respectively, and 57.07% of genes were functionally annotated with KEGG orthologous groups. Our results confirmed the existence of core microbiome in AD and showed that the type of feedstock (cattle, chicken, and pig manure) has a great influence on carbohydrate hydrolysis and methanogenesis. In addition, 2,426 metagenome-assembled genomes were recovered from all digestate samples, and all genomes were estimated to be ?80% complete with ?10% contamination.

Conclusions

This study deepens our understanding of the microbial composition and function in the AD process and also provides a huge number of reference genome and gene resources for analysis of anaerobic microbiota.

SUBMITTER: Ma S

PROVIDER: S-EPMC7842101 | biostudies-literature | 2021 Jan

REPOSITORIES: biostudies-literature

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Publications

A microbial gene catalog of anaerobic digestion from full-scale biogas plants.

Ma Shichun S Jiang Fan F Huang Yan Y Zhang Yan Y Wang Sen S Fan Hui H Liu Bo B Li Qiang Q Yin Lijuan L Wang Hengchao H Liu Hangwei H Ren Yuwei Y Li Shuqu S Cheng Lei L Fan Wei W Deng Yu Y

GigaScience 20210101 1

<h4>Background</h4>Biogas production with anaerobic digestion (AD) is one of the most promising solutions for both renewable energy production and resolving the environmental problem caused by the worldwide increase in organic waste. However, the complex structure of the microbiome in AD is poorly understood.<h4>Findings</h4>In this study, we constructed a microbial gene catalog of AD (22,840,185 genes) based on 1,817 Gb metagenomic data derived from digestate samples of 56 full-scale biogas pla ...[more]

PMID: 33506264

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Project description:The use of wildflower species as biogas feedstock carries the risk that their seeds survive anaerobic digestion (AD) and cause weed problems if spread with the digestate. Risk factors for seed survival in AD include low temperature, short exposure and hardseededness (HS). However, it is not possible to predict how AD will affect seed viability of previously unstudied species. In laboratory-scale reactors, we exposed seeds of eight species from a mixture of flowering wild plants intended as biogas feedstock and three reference species to AD at two mesophilic temperatures. Half of the species were HS, the other was non-HS (NHS). Viability was determined using a combination of tetrazolium and germination tests. Viability and germinability were modeled as functions of exposure time using a dose-response approach. Responses to AD varied considerably among species, and none of the considered influencing factors (time, temperature, HS) had a consistent effect. Seed lots of a species differed in inactivation times and seed-killing efficacy. The HS species Melilotus officinalis, Melilotus albus, and Malva sylvestris were particularly AD-resistant. They were the only ones that exhibited biphasic viability curves and tended to survive and germinate more at 42°C than at 35°C. Viability of the remaining species declined in a sigmoidal curve. Most NHS species were inactivated within a few days (Cichorium intybus, Daucus carota, Echium vulgare, and Verbascum thapsus), while HS species survived longer (Malva alcea). AD stimulated germination in the HS species A. theophrasti and its AD-resistance overlapped with that of the most resistant NHS species, C. album and tomato. In all seed lots, germinability was lost faster than viability, implying that mainly dormant seeds survived. After the maximum exposure time of 36 days, seeds of HS species and Chenopodium album were still viable. We concluded that viability responses to mesophilic AD were determined by the interplay of AD-conditions and species- and seed-lot-specific traits, of which HS was an important but only one factor. For the use of wildflowers as biogas feedstock, we recommended long retention times and special care with regard to HS species.

Project description:BackgroundDecomposition of biomass for biogas production can be practiced under wet and dry fermentation conditions. In contrast to the dry fermentation technology, wet fermentation is characterized by a high liquid content and a relatively low total solid content. In this study, the composition and functional potential of a biogas-producing microbial community in an agricultural biogas reactor operating under wet fermentation conditions was analyzed by a metagenomic approach applying 454-pyrosequencing. The obtained metagenomic dataset and corresponding 16S rRNA gene amplicon sequences were compared to the previously sequenced comparable metagenome from a dry fermentation process, meeting explicitly identical boundary conditions regarding sample and community DNA preparation, sequencing technology, processing of sequence reads and data analyses by bioinformatics tools.ResultsHigh-throughput metagenome sequencing of community DNA from the wet fermentation process applying the pyrosequencing approach resulted in 1,532,780 reads, with an average read length of 397 bp, accounting for approximately 594 million bases of sequence information in total. Taxonomic comparison of the communities from wet and dry fermentation revealed similar microbial profiles with Bacteria being the predominant superkingdom, while the superkingdom Archaea was less abundant. In both biogas plants, the bacterial phyla Firmicutes, Bacteroidetes, Spirochaetes and Proteobacteria were identified with descending frequencies. Within the archaeal superkingdom, the phylum Euryarchaeota was most abundant with the dominant class Methanomicrobia. Functional profiles of the communities revealed that environmental gene tags representing methanogenesis enzymes were present in both biogas plants in comparable frequencies. 16S rRNA gene amplicon high-throughput sequencing disclosed differences in the sub-communities comprising methanogenic Archaea between both processes. Fragment recruitments of metagenomic reads to the reference genome of the archaeon Methanoculleus bourgensis MS2(T) revealed that dominant methanogens within the dry fermentation process were highly related to the reference.ConclusionsAlthough process parameters, substrates and technology differ between the wet and dry biogas fermentations analyzed in this study, community profiles are very similar at least at higher taxonomic ranks, illustrating that core community taxa perform key functions in biomass decomposition and methane synthesis. Regarding methanogenesis, Archaea highly related to the type strain M. bourgensis MS2(T) dominate the dry fermentation process, suggesting the adaptation of members belonging to this species to specific fermentation process parameters.

Project description:The aim of this study was to evaluate life cycle environmental impacts associated with the generation of electricity from biogas produced by the anaerobic digestion (AD) of agricultural products and waste. Five real plants in Italy were considered, using maize silage, slurry, and tomato waste as feedstocks and cogenerating electricity and heat; the latter is not utilized. The results suggest that maize silage and the operation of anaerobic digesters, including open storage of digestate, are the main contributors to the impacts of biogas electricity. The system that uses animal slurry is the best option, except for the marine and terrestrial ecotoxicity. The results also suggest that it is environmentally better to have smaller plants using slurry and waste rather than bigger installations, which require maize silage to operate efficiently. Electricity from biogas is environmentally more sustainable than grid electricity for seven out of 11 impacts considered. However, in comparison with natural gas, biogas electricity is worse for seven out of 11 impacts. It also has mostly higher impacts than other renewables, with a few exceptions, notably solar photovoltaics. Thus, for the AD systems and mesophilic operating conditions considered in this study, biogas electricity can help reduce greenhouse gas (GHG) emissions relative to a fossil-intensive electricity mix; however, some other impacts increase. If mitigation of climate change is the main aim, other renewables have a greater potential to reduce GHG emissions. If, in addition to this, other impacts are considered, then hydro, wind, and geothermal power are better alternatives to biogas electricity. However, utilization of heat would improve significantly its environmental sustainability, particularly global warming potential, summer smog, and the depletion of abiotic resources and the ozone layer. Further improvements can be achieved by banning open digestate storage to prevent methane emissions and regulating digestate spreading onto land to minimize emissions of ammonia and related environmental impacts.

Dataset Information

A microbial gene catalog of anaerobic digestion from full-scale biogas plants.

Background

Findings

Conclusions

Publications

A microbial gene catalog of anaerobic digestion from full-scale biogas plants.

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