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Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth.


ABSTRACT: Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide bacterial, fungal, protist, and antimicrobial resistance gene profiles.

SUBMITTER: Reed E 

PROVIDER: S-EPMC7849694 | biostudies-literature | 2021 Jan

REPOSITORIES: biostudies-literature

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Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth.

Reed Elizabeth E   Sanderson Robert R   Sanderson Barbara B   Ramachandran Padmini P   Commichaux Seth S   Brown Eric E   Zheng Jie J   Strain Errol E   Ottesen Andrea A  

Microbiology resource announcements 20210114 2


Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide bacterial, fungal, protist, and antimicrobial resistance gene profiles. ...[more]

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