Environmentally induced phenotypic plasticity and DNA methylation changes in a wild potato growing in two contrasting Andean experimental gardens.
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ABSTRACT:
SUBMITTER: Ibanez VN
PROVIDER: S-EPMC7853039 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Global climate change is expected to affect mountain ecosystems significantly. Phenotypic plasticity, the ability of any genotype to produce a variety of phenotypes under different environmental conditions, is critical in determining the ability of species to acclimate to current climatic changes. Here, to simulate the impact of climate change, we compared the physiology of species of the genus Picea from different provenances and climatic conditions and quantified their phenotypic plasticity index (PPI) in two contrasting common gardens (dry vs. wet), and then considered phenotypic plastic effects on their future adaptation. The mean PPI of the photosynthetic features studied was higher than that of the stomatal features. Species grown in the arid and humid common gardens were differentiated: the stomatal length (SL) and width (SW) on the adaxial surface, the transpiration rate (Tr) and leaf mass per area (LMA) were more highly correlated with rainfall than other traits. There were no significant relationships between the observed plasticity and the species' original habitat, except in P. crassifolia (from an arid habitat) and P. asperata (from a humid habitat). Picea crassifolia exhibited enhanced instantaneous efficiency of water use (PPI = 0.52) and the ratio of photosynthesis to respiration (PPI = 0.10) remained constant; this species was, therefore, considered to the one best able to acclimate when faced with the effects of climate change. The other three species exhibited reduced physiological activity when exposed to water limitation. These findings indicate how climate change affects the potential roles of plasticity in determining plant physiology, and provide a basis for future reforestation efforts in China.
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2007-09-01 | GSE8243 | GEO
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Project description:The response to moderate and heavy drought of two Solanum tuberosum ssp. Andigena varieties, Sullu (NP 03.03) and SA 2563 (NP 03.01), planted in rain- and soil water protected fields in the Peruvian highlands are compared. Previous experiments indicate that Sullu has a greater capacity for yield maintenance under drought than SA 2563. Both clones have similar morphological properties, vegetative periods and rooting depths, so it can be assumed that the cause for increased drought tolerance of clone NP 03.03 is rather due to physiological or biochemical mechanisms, than to drought escape by deep rooting or earliness. Sullu and SA 2563 were planted in a random block design with 5 plants per bloc and 7 repetitions per treatment. Treatments: (1) drought stress, (2) irrigated control The plants were drip-irrigated in both treatments until tuberization (until day 84 after planting). Subsequently, the irrigation was stopped in the drought field, but continued in the control field. The soil moisture content in the control field was kept near field capacity. Planting date: October 05 2004 Start of drought treatment (during tuberization, 84 days after planting): December 28 2004 First sampling (soil water potential: -0.3 mPa 114 days after planting): January 27 2005 Second sampling (soil water potential –0.6 MPa, 134 days after planting): February 15 2005 Harvest: March 19 2005 (165 days after planting) The experimental design includes gene expression analysis in leaves, roots and stolons at two time points, when soil water potential reaches -0.3 and –0.6 MPa. Gene expression changes will be set in relation with physiological and agronomical data obtained in the same experiment. Keywords: Direct comparison 19 hybs total
2007-09-01 | E-GEOD-8243 | biostudies-arrayexpress
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Project description:Despite the accumulating evidence suggesting the importance of phenotypic plasticity in diversification and adaptation, little is known about plastic variation in primate skulls. The present study evaluated the plastic variation of the mandible in Japanese macaques by comparing wild and captive specimens. The results showed that captive individuals are square-jawed with relatively longer tooth rows than wild individuals. We also found that this shape change resembles the sexual dimorphism, indicating that the mandibles of captive individuals are to some extent masculinized. By contrast, the mandible morphology was not clearly explained by ecogeographical factors. These findings suggest the possibility that perturbations in the social environment in captivity and resulting changes of androgenic hormones may have influenced the development of mandible shape. As the high plasticity of social properties is well known in wild primates, social environment may cause the inter- and intra-population diversity of skull morphology, even in the wild. The captive-wild morphological difference detected in this study, however, can also be possibly formed by other untested sources of variation (e.g. inter-population genetic variation), and therefore this hypothesis should be validated further.
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Project description:Background and aimsPhenotypic plasticity can affect the geographical distribution of taxa and greatly impact the productivity of crops across contrasting and variable environments. The main objectives of this study were to identify genotype-phenotype associations in key biomass and phenology traits and the strength of phenotypic plasticity of these traits in a short-rotation coppice willow population across multiple years and contrasting environments to facilitate marker-assisted selection for these traits.MethodsA hybrid Salix viminalis ?×?( S. viminalis × Salix schwerinii ) population with 463 individuals was clonally propagated and planted in three common garden experiments comprising one climatic contrast between Sweden and Italy and one water availability contrast in Italy. Several key phenotypic traits were measured and phenotypic plasticity was estimated as the trait value difference between experiments. Quantitative trait locus (QTL) mapping analyses were conducted using a dense linkage map and phenotypic effects of S. schwerinii haplotypes derived from detected QTL were assessed.Key resultsAcross the climatic contrast, clone predictor correlations for biomass traits were low and few common biomass QTL were detected. This indicates that the genetic regulation of biomass traits was sensitive to environmental variation. Biomass QTL were, however, frequently shared across years and across the water availability contrast. Phenology QTL were generally shared between all experiments. Substantial phenotypic plasticity was found among the hybrid offspring, that to a large extent had a genetic origin. Individuals carrying influential S. schwerinii haplotypes generally performed well in Sweden but less well in Italy in terms of biomass production.ConclusionsThe results indicate that specific genetic elements of S. schwerinii are more suited to Swedish conditions than to those of Italy. Therefore, selection should preferably be conducted separately for such environments in order to maximize biomass production in admixed S. viminalis × S. schwerinii populations.
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