Dataset Information

Localized and Delocalized States of a Diamine Cation: Resolution of a Controversy.

ABSTRACT: Recent Rydberg spectroscopy measurements of a diamine molecule, N,N'-dimethylpiperazine (DMP), indicate the existence of a localized electronic state as well as a delocalized electronic state. This implies that the cation, DMP⁺, can similarly have its positive charge either localized on one of the N atoms or delocalized over both. This interpretation of the experiments has, however, been questioned based on coupled cluster calculations. In this article, results of high-level multireference configuration interaction calculations are presented where a localized state of DMP⁺ is indeed found to be present with an energy barrier separating it from the delocalized state. The energy difference between the two states is in excellent agreement with the experimental estimate. The results presented here, therefore, support the original interpretation of the experiments and illustrate a rare shortcoming of CCSD(T), the "gold standard" of quantum chemistry. These results have implications for the development of density functionals, as most functionals fail to produce the localized state.

SUBMITTER: Galynska M

PROVIDER: S-EPMC7875508 | biostudies-literature | 2021 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Localized and Delocalized States of a Diamine Cation: Resolution of a Controversy.

Gałyńska Marta M Ásgeirsson Vilhjálmur V Jónsson Hannes H Bjornsson Ragnar R

The journal of physical chemistry letters 20210126 4

Recent Rydberg spectroscopy measurements of a diamine molecule, N,N'-dimethylpiperazine (DMP), indicate the existence of a localized electronic state as well as a delocalized electronic state. This implies that the cation, DMP+, can similarly have its positive charge either localized on one of the N atoms or delocalized over both. This interpretation of the experiments has, however, been questioned based on coupled cluster calculations. In this article, results of high-l ...[more]

PMID: 33497225

Similar Datasets

Project description:Background and Aims:Rapid evolutionary divergence and reticulate evolution may result in phylogenetic relationships that are difficult to resolve using small nucleotide sequence data sets. Next-generation sequencing methods can generate larger data sets that are better suited to solving these puzzles. One major and long-standing controversy in conifers concerns generic relationships within the subfamily Cupressoideae (105 species, approx. 1/6 of all conifers) of Cupressaceae, in particular the relationship between Juniperus, Cupressus and the Hesperocyparis-Callitropsis-Xanthocyparis (HCX) clade. Here we attempt to resolve this question using transcriptome-derived data. Methods:Transcriptome sequences of 20 species from Cupressoideae were collected. Using MarkerMiner, single-copy nuclear (SCN) genes were extracted. These were applied to estimate phylogenies based on concatenated data, species trees and a phylogenetic network. We further examined the effect of alternative backbone topologies on downstream analyses, including biogeographic inference and dating analysis. Results:Based on the 73 SCN genes (>200 000 bp total alignment length) we considered, all tree-building methods lent strong support for the relationship (HCX, (Juniperus, Cupressus)); however, strongly supported conflicts among individual gene trees were also detected. Molecular dating suggests that these three lineages shared a most recent common ancestor approx. 60 million years ago (Mya), and that Juniperus and Cupressus diverged about 56 Mya. Ancestral area reconstructions (AARs) suggest an Asian origin for the entire clade, with subsequent dispersal to North America, Europe and Africa. Conclusions:Our analysis of SCN genes resolves a controversial phylogenetic relationship in the Cupressoideae, a major clade of conifers, and suggests that rapid evolutionary divergence and incomplete lineage sorting probably acted together as the source for conflicting phylogenetic inferences between gene trees and between our robust results and recently published studies. Our updated backbone topology has not substantially altered molecular dating estimates relative to previous studies; however, application of the latest AAR approaches has yielded a clearer picture of the biogeographic history of Cupressoideae.

Dataset Information

Localized and Delocalized States of a Diamine Cation: Resolution of a Controversy.

Publications

Localized and Delocalized States of a Diamine Cation: Resolution of a Controversy.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets