Browse
Submit Data
Databases
API
Help

Dataset Information

7 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome Size Estimation of Callipogon relictus Semenov (Coleoptera: Cerambycidae), an Endangered Species and a Korea Natural Monument.

ABSTRACT: We estimated the genome size of a relict longhorn beetle, Callipogon relictus Semenov (Cerambycidae: Prioninae)-the Korean natural monument no. 218 and a Class I endangered species-using a combination of flow cytometry and k-mer analysis. The two independent methods enabled accurate estimation of the genome size in Cerambycidae for the first time. The genome size of C. relictus was 1.8 ± 0.2 Gb, representing one of the largest cerambycid genomes studied to date. An accurate estimation of genome size of a critically endangered longhorned beetle is a major milestone in our understanding and characterization of the C. relictus genome. Ultimately, the findings provide useful insight into insect genomics and genome size evolution, particularly among beetles.

SUBMITTER: Yu YS

PROVIDER: S-EPMC7910860 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Complete mitochondrial genome of <i>Callipogon relictus</i> Semenov (Coleoptera: Cerambycidae): a natural monument and endangered species in Korea.

Project description:In the present study, we report the first complete mitochondrial DNA genome of the genus Callipogon based on C. relictus, a natural monument and endangered species in South Korea. The mitogenome is 15,742 base pairs with 13 protein coding genes (PCGs), two rRNAs, 22 tRNAs, and a 1033?bp long AT-rich region. The overall base composition was 67.3% AT and 32.7 GC. Among 13 PCGs, seven genes (Nad2, Atp8, Atp6, Nad4L, Nad6, Cob, Nad1) harbour the typical stop codon TAA or TAG, whereas remaining five genes terminate with T. Interestingly, Cox3 employs AGA as the termination codon.

| S-EPMC7800709 | biostudies-literature

Phylogeographic Investigation of an Endangered Longhorn Beetle, <i>Callipogon relictus</i> (Coleoptera: Cerambycidae), in Northeast Asia: Implications for Future Restoration in Korea.

Project description:The longhorn beetle, Callipogon (Eoxenus) relictus Semenov, is the only remnant species found in the Palearctic region, while all other Callipogon species are distributed mainly in Central America and partly in South America. This species has been placed in the first category (as 'critically endangered') of the Red Data Book in Russia and designated as one of the top-priority target species among all endangered invertebrate species for restoration in South Korea since 2006. Although its restricted distribution in Northeast Asia with a high conservational value has been highlighted, genetic features of C. relictus from different geographic regions remain unexplored. We first investigated the level of genetic diversity and phylogeographic patterns of C. relictus to evaluate the current conservational status and the feasibility of the implementation of a restoration program. The average genetic divergence of mitochondrial gene COI based on Kimura-2-parameter distance among the four regions in Russia, China, North Korea, and South Korea was 2.2%, which lies within the range of intraspecific levels. However, two separate clades with 3.8% divergence were identified, despite no geographical clustering of haplotypes. The linear pattern of the haplotype network with a high level of haplotype and nucleotide diversities suggests that the wide range of currently fragmented populations might be the remnant of genetically diverse populations in the past. This study will provide crucial information on the genetic characteristics and phylogeographic history of C. relictus, which will help to establish conservation strategies for this cherished insect species in Northeast Asia.

| S-EPMC8232212 | biostudies-literature

A new species of the genus Falsoibidion Pic (Coleoptera, Cerambycidae) from Korea.

Project description:A new species of the genus Falsoibidion Pic, 1922 (Coleoptera, Cerambycidae, Cerambycinae, Callidiopini) from Korea is described. Habitus and genitalia of male and female of the new species are illustrated.

| S-EPMC4984419 | biostudies-literature

New South American species of Lamiinae (Coleoptera, Cerambycidae).

Project description:Two new species of cerambycid beetles are described from South America: Ataxia camiriensis (Pteropliini), from Bolivia, and Falsamblesthis uniformis (Forsteriini), from Peru. The new species are included in previous keys.

| S-EPMC5240123 | biostudies-literature

Four new species of Cerambycidae (Coleoptera) from Paraguay.

Project description:Four new species of Cerambycidae are described from Paraguay: Eraninatomentilla (Hemilophini); Mimasyngenesconcolor (Desmiphorini); Recchiadrechseli (Aerenicini); and Microibidionbimaculatum (Neoibidionini). The new species are included in known keys.

| S-EPMC4490218 | biostudies-literature

Four new species of Desmiphorini (Coleoptera, Cerambycidae, Lamiinae).

Project description:Four new species of Desmiphorini are described: Desmiphora (Desmiphora) orozcoi, from Belize; Estolawappesi, from Bolivia; Estolaimitatrix, from Bolivia; and Gyrpanetesclarkei, from Bolivia. A key to the species of Gyrpanetes is provided, and Estolawappesi and Estolaimitatrix are included in an existing key.

| S-EPMC4524274 | biostudies-literature

A new species of Xylotrechus Chevrolat from China (Coleoptera, Cerambycidae).

Project description:Xylotrechus tristisfaciessp. n. (Coleoptera, Cerambycidae, Cerambycinae, Clytini) from China is described and illustrated. Characters distinguishing the new species from its close relatives, which possess an entirely black or dark brown pronotum with a black median stripe on the disc and dense yellowish to gray pubescent elytra with black or brown spots or bands, are presented.

| S-EPMC5740411 | biostudies-literature

A new species of Phymatodes Mulsant (Coleoptera, Cerambycidae) from China.

Project description:A new species Phymatodes (Poecilium) latefasciatus sp. n. (Coleoptera, Cerambycidae, Cerambycinae, Callidiini) from China is described and illustrated. Features distinguishing the new species from its congeners are presented.

| S-EPMC3904137 | biostudies-other

New species of Cerambycidae (Coleoptera) from South and Central America.

Project description:Three new species are described: Tropidion birai (Cerambycinae, Neoibidionini) from Bolivia; Chrysoprasis birai (Cerambycinae, Heteropsini) from Panama; and Recchia nearnsi (Lamiinae, Aerenicini) from Bolivia. The new species are included in amended versions of previously published keys to species of each genus.

| S-EPMC4668908 | biostudies-other

Hispaniolan hemilophini (coleoptera, cerambycidae, lamiinae).

Project description:The Tribe Hemilophini (Lamiinae) is reviewed for Hispaniola and an identification key is provided. Fifteen species are now known from the island, including one new species of Adesmus (Adesmus fortunei from Pedernales and La Vega Provinces, Dominican Republic), one new species of Oedudes (Oedudes anulatus from Peravia and La Vega Provinces, Dominican Republic), and five new species of Calocosmus (Calocosmus contortus from San Cristóbal Province, Calocosmus punctatus from Peravia Province, Calocosmus rawlinsi from Elías Piña Province, Calocosmus robustus from La Vega Province, and Calocosmus thonalmus from La Altagracia Province, all in the Dominican Republic). Oedudes and Adesmus are new island and country records for Hispaniola and Dominican Republic, respectively. Calocosmus holosericeus Gahan is a new synonym of Calocosmus janus Bates. In addition to the new species, five new country records and four new island records are presented for Calocosmus.

| S-EPMC3591756 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data