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Effects of Sitka spruce masting on phenology and demography of siskins Spinus spinus.

ABSTRACT: Masting behaviour of Sitka spruce Picea sitchensis may influence Eurasian siskin Spinus spinus breeding ecology as breeding siskins specialize on spruce seeds. We caught siskins and other small passerines over 16 years using mist nets adjacent to large plantations of mature Sitka spruce. We sexed, aged, measured and weighed the birds and collected feather samples from fledglings to measure nitrogen and carbon stable isotope ratios. Siskins departed in late summer, and returned, and bred earlier in years of higher cone abundance. Nitrogen and carbon isotopes indicated that siskins fed their chicks on Sitka spruce seeds in most years, and more so in years of high cone production. More siskins were caught following heavy rainfall, when the cones had closed, encouraging the birds to seek alternative food sources. Fledglings were not heavier or larger in years with higher cone crops but were more numerous. However, the age ratio of siskins caught the following year was unaffected by cone crop. Given their reliance on Sitka spruce seeds, climate change may have a major impact on siskin numbers by altering the availability of Sitka spruce seeds, either through changes in masting patterns or cone opening, or due to climate-related changes in forestry practices. Siskins represent a valuable study system to conservation ecology, where a native species is ecologically reliant on introduced taxa.

SUBMITTER: Furness EN

PROVIDER: S-EPMC7921583 | biostudies-literature | 2021 Mar

REPOSITORIES: biostudies-literature

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Effects of Sitka spruce masting on phenology and demography of siskins Spinus spinus.

Furness Euan N EN Furness Robert W RW

Scientific reports 20210301 1

Masting behaviour of Sitka spruce Picea sitchensis may influence Eurasian siskin Spinus spinus breeding ecology as breeding siskins specialize on spruce seeds. We caught siskins and other small passerines over 16 years using mist nets adjacent to large plantations of mature Sitka spruce. We sexed, aged, measured and weighed the birds and collected feather samples from fledglings to measure nitrogen and carbon stable isotope ratios. Siskins departed in late summer, and returned, and bred earlier ...[more]

PMID: 33649392

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Project description:BackgroundMembers of the pine family (Pinaceae), especially species of spruce (Picea spp.) and pine (Pinus spp.), dominate many of the world's temperate and boreal forests. These conifer forests are of critical importance for global ecosystem stability and biodiversity. They also provide the majority of the world's wood and fiber supply and serve as a renewable resource for other industrial biomaterials. In contrast to angiosperms, functional and comparative genomics research on conifers, or other gymnosperms, is limited by the lack of a relevant reference genome sequence. Sequence-finished full-length (FL)cDNAs and large collections of expressed sequence tags (ESTs) are essential for gene discovery, functional genomics, and for future efforts of conifer genome annotation.ResultsAs part of a conifer genomics program to characterize defense against insects and adaptation to local environments, and to discover genes for the production of biomaterials, we developed 20 standard, normalized or full-length enriched cDNA libraries from Sitka spruce (P. sitchensis), white spruce (P. glauca), and interior spruce (P. glauca-engelmannii complex). We sequenced and analyzed 206,875 3'- or 5'-end ESTs from these libraries, and developed a resource of 6,464 high-quality sequence-finished FLcDNAs from Sitka spruce. Clustering and assembly of 147,146 3'-end ESTs resulted in 19,941 contigs and 26,804 singletons, representing 46,745 putative unique transcripts (PUTs). The 6,464 FLcDNAs were all obtained from a single Sitka spruce genotype and represent 5,718 PUTs.ConclusionThis paper provides detailed annotation and quality assessment of a large EST and FLcDNA resource for spruce. The 6,464 Sitka spruce FLcDNAs represent the third largest sequence-verified FLcDNA resource for any plant species, behind only rice (Oryza sativa) and Arabidopsis (Arabidopsis thaliana), and the only substantial FLcDNA resource for a gymnosperm. Our emphasis on capturing FLcDNAs and ESTs from cDNA libraries representing herbivore-, wound- or elicitor-treated induced spruce tissues, along with incorporating normalization to capture rare transcripts, resulted in a rich resource for functional genomics and proteomics studies. Sequence comparisons against five plant genomes and the non-redundant GenBank protein database revealed that a substantial number of spruce transcripts have no obvious similarity to known angiosperm gene sequences. Opportunities for future applications of the sequence and clone resources for comparative and functional genomics are discussed.

Dataset Information

Effects of Sitka spruce masting on phenology and demography of siskins Spinus spinus.

Publications

Effects of Sitka spruce masting on phenology and demography of siskins Spinus spinus.

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