Browse
Submit Data
Databases
API
Help

Dataset Information

21 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Short-term variation in abundance of four Acartia species (Copepoda, Calanoida) in a eutrophic bay.

ABSTRACT: The short-term variation in the abundance of Acartia copepods in the eutrophic Gamak Bay of South Korea was investigated with weekly measurements from October 2007 to September 2008. During this period, four Acartia species (A. erythraea, A. ohtsukai, A. omorii, and A. sinjiensis) were recorded as showing seasonally different peak abundance. The abundance of A. erythraea and A. sinjiensis was high in autumn, whereas that of A. omorii was high from winter to spring. In summer, A. erythraea, A. ohtsukai, and A. sinjiensis coexisted at peak abundance significantly related to water temperature and salinity. Results from the response curves of the four Acartia species to water temperature and salinity suggest that A. erythraea and A. sinjiensis increased in abundance at water temperatures >18 °C, whereas A. ohtsukai increased in abundance at water temperatures >27 °C. The occurrence of A. erythraea, A. ohtsukai, and A. sinjiensis decreased with increasing salinity, but chlorophyll-a concentration showed no effect on occurrence. Despite these findings, the coexistence of the three ecologically similar species may be due to prey abundance in summer and autumn (chlorophyll-a concentration >10 µg L^-1). Notably, the wide range of the response curve of A. omorii indicates its occurrence at higher salinity levels than other species.

SUBMITTER: Choi SY

PROVIDER: S-EPMC7955669 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

A new species in the genus Acartia Dana, 1846 (Crustacea, Copepoda, Calanoida, Acartiidae) from the South Pacific coastal waters of Nadi Bay, Fiji.

Project description:A new species in the genus Acartia, Acartia nadiensis sp. nov., is described from Fijian coastal waters. This species belongs to the subgenus Odontacartia based on the following morphological features: presence of a rostral filaments, a pointed process on the last prosomite, a serrated terminal spine on female P5, and the absence of a protrusion on the basis of the male right P5. This new species can be differentiated from its congeners by the combination of the absence of a spine on the first segment of the antennules, the short outer seta of female P5, and a medial spine on the exp-2 of the left male P5. Phylogenetic analyses using mitochondrial COI partial sequences show that the new species is distinct from its congeners.

| S-EPMC6901615 | biostudies-literature

A new species of Acartia (Copepoda, Calanoida) from the Philippines, based on morphological and molecular analyses.

Project description:A new species of Acartia (Odontacartia), A. (O.) edentatasp. n., was collected from Leyte Island in the Philippines. Morphologically, the new species resembles A. (O.) pacifica Steuer, 1915. The female of the new species differs from other species of the A. (O.) erythraea Giesbrecht, 1889 species group in the absence of a pair of sharp spines on the posterior border of the genital double-somite and absence of setules on the lateral margins of urosomites 1-3. Unlike other congeners of the species group, males of the new species lack fine setules along the posterior margin of the prosome. Comparison of the new species with A. (O.) pacifica by pairwise distance data for the 16S (282 bp) gene indicates that these species differ by 20-21%, while the COI gene (636 bp) indicates a difference of 16-17%. The new species seems to be a coastal, occurring in warm waters having a salinity of 33.5.

| S-EPMC6333732 | biostudies-literature

First report of the presence of Acartiabispinosa Carl, 1907 (Copepoda, Calanoida) in a semi-enclosed Bay (Sharm El-Maya), northern Red Sea with some notes on its seasonal variation in abundance and body size.

Project description:The calanoid copepod, Acartiabispinosa Carl, 1907, is reported for the first time in the Red Sea, where it is found to be an important copepod in the mesozooplankton community structure of the Sharm El-Maya Bay. Female and male are fully redescribed and illustrated of as the mouthparts of this species have never previously been described and figured. Acartiabispinosa was collected in the plankton samples throughout the year and showed two peaks of abundance, a pronounced one in April (4234 individuals m(-3)), and second smaller peak during November (1784 individuals m(-3)). The average total length of females varied between 1.32 and 1.53 mm at the end of June and January respectively. For males, the average total length fluctuated between 1.07 and 1.16 mm at end of June and March respectively. Temperature showed an inverse relationship with the body length (P > 0.001) and seemed to be one of the prime factors affecting the body length of both sexes.

| S-EPMC4205734 | biostudies-literature

Dataset of long term variation in species occurrence and abundance of tintinnid assemblages in Jiaozhou Bay, China.

Project description:This article contains supportive data related to a research article entitled "Annual variation of species richness and lorica oral diameter characteristics of tintinnids in a semi-enclosed bay of western Pacific" (Feng et al., 2018) [1]. This article describes long term data of tintinnid assemblages in Jiaozhou Bay, Yellow sea, a semi-enclosed basin ecosystem of western Pacific, from May 2003 to December 2012. We sum up the whole dataset for each year showing tintinnid species occurrence and abundance at each site by date, as well as the photographic documentation of each tintinnid species. Further interpretation and discussion can be found in recently published by Feng et al. in Estuarine, Coastal and Shelf Science at Science.

| S-EPMC6141136 | biostudies-other

Two new species of benthopelagic Stephos (Copepoda, Calanoida, Stephidae) from Korea.

Project description:Two new species of benthopelagic copepods of the genus Stephos T. Scott, 1892, belonging to the family Stephidae G.O. Sars, 1902, are described based on specimens collected in the stagnant water flooding the burrows excavated by ocypodid crabs in two intertidal mud-flats, and from near-bottom shallow waters in Korea, respectively. They can be easily diagnosed based on the ornamentation of both the female genital double-somite and genital operculum; the morphology of the distal segment of the male right P5; the presence/absence of a tiny pointed process on the distomedial angle of second segment of female P5; and the condition (seta or spine) of the lateral armature element on the distal segment of female fifth legs, among other features. This is one of the few cases reported of calanoid copepods living as commensals of other invertebrates, and raises to six the number of members of the genus reported from Asia. This is also the first record of the family Stephidae in Korea.

| S-EPMC4400403 | biostudies-other

A new species of Notodiaptomus from the Ecuadorian Andes (Copepoda, Calanoida, Diaptomidae).

Project description:Notodiaptomus cannarensissp. n. is described from a reservoir on the Amazonian slope of the Ecuadorian Andes. The new species is unique among diaptomid calanoid copepods in the display of hypertrophied, symmetrical wing-like extensions at each side of the female composite genital somite. Furthermore, it displays a female urosome reduced to only two somites due to the incorporation of abdominal somites III and IV to the composite genital double-somite, and a male right fifth leg with the outer spine of second exopodal segment recurved and implanted proximally on margin. It differs from any other Notodiaptomus in the display of a large rectangular lamella on proximal segment of exopod of male right fifth leg. The species is currently known only from Mazar reservoir, a eutrophic water body placed above 2127 m a.s.l. on the River Paute (Cañar Province; southern Ecuador), where it is the most common crustacean in the water column.

| S-EPMC5673853 | biostudies-other

A new species of Notodiaptomus from the Amazon basin (Crustacea, Copepoda, Calanoida, Diaptomidae).

Project description:A new Diaptomidae species is presented from the Neotropical region. It was found in two Amazonian lakes, Ressaca and Arapujá, both in Pará State, Brazil. The lakes are 400 km apart and threatened by the building of reservoirs for hydropower generation and pollution by human settlements. The new species resembles N. paraensis Dussart & Robertson, 1984, but it can be distinguished from this species and other congeners in having a special process on the fifth leg basis of the male, by the place of insertion of lateral spine in the last segment of right P5 of male, the shape and relationship between length and width of segments of male and female P5 exopodite 2 with stout inner process bearing short setules and outer small spine, exopodite 3, with two terminal setae, outer smaller; endopodite 1-segmented with one subterminal seta and oblique comb of spinules, the presence of a line of dorsal spinules at the distal margin of thoracic somites in both sexes. A brief comparison with other Notodiaptomus species is presented in the discussion.

| S-EPMC5523360 | biostudies-literature

Evidence of cryptic and pseudocryptic speciation in the Paracalanus parvus species complex (Crustacea, Copepoda, Calanoida).

Project description:IntroductionMany marine planktonic crustaceans such as copepods have been considered as widespread organisms. However, the growing evidence for cryptic and pseudo-cryptic speciation has emphasized the need of re-evaluating the status of copepod species complexes in molecular and morphological studies to get a clearer picture about pelagic marine species as evolutionary units and their distributions. This study analyses the molecular diversity of the ecologically important Paracalanus parvus species complex. Its seven currently recognized species are abundant and also often dominant in marine coastal regions worldwide from temperate to tropical oceans.ResultsCOI and Cytochrome b sequences of 160 specimens of the Paracalanus parvus complex from all oceans were obtained. Furthermore, 42 COI sequences from GenBank were added for the genetic analyses. Thirteen distinct molecular operational taxonomic units (MOTU) and two single sequences were revealed with cladistic analyses (Maximum Likelihood, Bayesian Inference), of which seven were identical with results from species delimitation methods (barcode gaps, ABDG, GMYC, Rosenberg's P(AB)). In total, 10 to 12 putative species were detected and could be placed in three categories: (1) temperate geographically isolated, (2) warm-temperate to tropical wider spread and (3) circumglobal warm-water species.ConclusionsThe present study provides evidence of cryptic or pseudocryptic speciation in the Paracalanus parvus complex. One major insight is that the species Paracalanus parvus s.s. is not panmictic, but may be restricted in its distribution to the northeastern Atlantic.

| S-EPMC3948017 | biostudies-literature

The mitochondrial genome of Phyllodiaptomus tunguidus Shen & Tai, 1964 (Copepoda, Calanoida) and its phylogeny.

Project description:The mitochondrial genome of Phyllodiaptomus diaptomus was sequenced and assembled via Next-Generation Sequencing (NGS) and iterative assembly with a reference seed. The genome is 16446 bp long, A + T biased (69.4%), with 13 protein-coding genes, 22 tRNAs, and 2 rRNA. All protein-coding genes are initiated by a typical "ATN" codon. ND1, ND2, ATP6 genes are terminated with "TAG", the other 10 genes are terminated with "TAA". This is the first complete mitogenome published in the Diaptomidae. It provides molecular information useful to a better understanding of the phylogeny of calanoids.

| S-EPMC7782680 | biostudies-literature

Morphological and molecular diversity patterns of the genus Tropodiaptomus Kiefer, 1932 (Copepoda, Calanoida, Diaptomidae) in Thailand.

Project description:Tropodiaptomus is one of the most specious genera in the family Diaptomidae, but it is often rare in terms of distribution and abundance. Moreover, Tropodiaptomus species show a noteworthy variability in some of the morphological characters considered of prime importance in diaptomid taxonomy, and the presence of cryptic or pseudocryptic species is likely. Thus, through a geographically-wide sampling in Thailand, we aimed to investigate the local diversity of the genus and to compare the morphological and molecular diversity pattern based on mitochondrial and nuclear genes sequences. DNA taxonomy was also implemented in order to check whether the Tropodiaptomus lineages were independent species according to the "evolutionary genetic species concept". Six Tropodiaptomus morphospecies were found, three of which are putative species new to Science pending a formal description. The finding of such a high incidence of undescribed species stresses the existence of a significant "Linnean shortfall" affecting Thai diaptomids. The molecular results showed that most of the studied species could be identified consistently with their morphology-based taxonomy. However, Tropodiaptomus vicinus and T. cf. lanaonus showed a high level of genetic diversity, suggesting that traditional morphological techniques might be inadequate for correctly assessing their taxonomical status.

| S-EPMC8828757 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data