Browse
Submit Data
Databases
API
Help

Dataset Information

8 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Is the Polylactic Acid Fiber in Green Compost a Risk for Lumbricus terrestris and Triticum aestivum?

ABSTRACT: Polylactic acid (PLA) bioplastic was introduced to the market as an environmentally friendly potential solution for plastic pollution. However, the effects of bioplastic debris mixed with composts on soil macroinvertebrates, plant growth and soil conditions are still unknown. Soil macroinvertebrates are soil health indicators. A reduction in their abundance is a sign of soil degradation. The objectives of this study were (i) to assess PLA debris in greenhouse composts, and (ii) to test the ecotoxicological effects of PLA debris mixed with compost on Lumbricus terrestris, a soil organism model, and on Triticum aestevium, a plant growth model. The study was comprised of three stages: (1) determine the PLA debris size distribution in composts; (2) assess the ecotoxicological effects of real-world concentrations (0% to 5%) of PLA mixed with compost on earthworm mortality and reproduction; and (3) assess the influence of compost mixed with real-world PLA concentrations on plant growth and physicochemical soil conditions. One percent of PLA debris was found in green composts, 40% of composted PLA debris measured between 1-10 mm, with a concentration of 82.8 ± 17.4 microplastics.gram^-1 compost. A concentration of 1% PLA in composts resulted in significant mortality in earthworms. No significant effects of PLA mixed with composts were observed on plant growth or soil physicochemical conditions. Further studies are required in order to test the effect of this biopolymer on different earthworm and plant' species.

SUBMITTER: Huerta-Lwanga E

PROVIDER: S-EPMC7956588 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Increasing the stability of Lumbricus terrestris erythrocruorin via poly(acrylic acid) conjugation.

Project description:Since donated red blood cells must be constantly refrigerated, they are often unavailable in remote areas and battlefields. The goal of this study was to synthesize a highly stable blood substitute that does not require refrigeration. Specifically, the extracellular haemoglobin (a.k.a. erythrocruorin, Ec) of the earthworm Lumbricus terrestris erythrocruororin (LtEc) was cross-linked with poly(acrylic acid) (PAA) and ethylene diamine (EDA). PAGE analysis of the LtEc nanoparticles reveals cross-linking between subunits, while dynamic light scattering and scanning electron microscopy show that cross-linking significantly increases the size of the LtEc nanoparticles (164?±?13.9?nm). Cross-linking also significantly increased the thermal stability of the LtEc nanoparticles by 10?°C (Tm?=?72?±?0.84?°C) relative to native LtEc (Tm?=?62?±?0.6?°C). In addition, while native LtEc rapidly dissociates at pH 9, the LtEc nanoparticles resist subunit dissociation up to pH 10. The oxygen affinity of the LtEc nanoparticles (P50?=?6.85?±?0.13?mm Hg) is much higher than native LtEc (P50?=?26.67?±?0.4?mm Hg), but the cooperativity (n?=?2.43?±?0.12) is not affected. Altogether, these results show that cross-linking LtEc with PAA and EDA provides a potential blood substitute with increased stability and oxygen affinity.

| S-EPMC6476418 | biostudies-literature

Ceramide glycanase from the earthworm, Lumbricus terrestris.

Project description:Ceramide glycanase (CGase) is an enzyme that cleaves the linkage between the sugar chain and the ceramide. To make this enzyme readily available, we have developed a simple method for preparing it from the earthworm, Lumbricus terrestris. The method involves Bio-Gel A-0.5m, octyl-Sepharose and p-aminophenylthiogalactoside-agarose column chromatography. By gel filtration, the molecular mass of earthworm CGase was found to be 43.7 kDa. With ganglioside GM1 as substrate, the optimal pH of this enzyme was found to be between pH 3.5 and 4.0. Earthworm CGase hydrolyses glycolipids only in the presence of a detergent. Among various bile salts tested, sodium cholate was found to be the most effective in stimulating the hydrolysis of GM1 by this enzyme. Earthworm CGase released intact glycan chains from various glycosphingolipids in which the glycan chain is linked to the ceramide through a beta-glucosyl linkage. It also detached glycan chains from lactosyldialkylglycerol and alkyl-beta-lactosides.

| S-EPMC1132833 | biostudies-other

Lumbricus terrestris

Project description:Lumbricus terrestris overview

| PRJNA230855 | ENA

The amino acid sequence of ferredoxin from Triticum aestivum (wheat).

Project description:The amino acid sequence of the ferredoxin of Triticum aestivum (wheat) was determined by using a Beckman 890C sequencer in combination with the dansyl--phenylisothiocyanate method to characterize peptides obtained by tryptic, chymotryptic and thermolytic digestion of CNBr-cleavage fragments. The molecule consists of a single polypeptide chain of 97 residues and has an unblocked N-terminus. It shows considerable similarity to other plant-type ferredoxins.

| S-EPMC1186635 | biostudies-other

Glutaraldehyde cross-linking increases the stability of Lumbricus terrestris erythrocruorin.

Project description:Since donated red blood cells must be constantly refrigerated, they are not available in remote areas and battlefields. We have previously shown that the hemoglobin of the earthworm Lumbricus terrestris (LtEc) is an effective and safe substitute for donated blood that is stable enough to be stored for long periods at the relatively high temperatures that may be encountered in remote areas. The goal of this study was to further increase the thermal stability of LtEc by covalently cross-linking LtEc with glutaraldehyde (gLtEc). Our results show that the melting temperatures of the gLtEc samples steadily increase as the molar ratio of glutaraldehyde to heme increases (from Tm ?=?57°C for native LtEc up to Tm ?=?68°C at a ratio of 128:1). In addition, while native LtEc is susceptible to subunit dissociation at alkaline pH (8-10), cross-linking with glutaraldehyde completely prevents dissociation of gLtEc at pH 10. Increasing the molar ratio of glutaraldehyde:heme also significantly increased the oxygen affinity of gLtEc, but this effect was decreased by cross-linking gLtEc in the deoxygenated T state. Finally, while gLtEc samples cross-linked at low G:H ratios (e.g., 2:1) exhibited slight increases in oxidation rate in Tris buffer, no significant difference in oxidation rate was observed between native LtEc and the gLtEc samples in Ringer's Solution, which contains antioxidants. Overall, cross-linking LtEc with glutaraldehyde significantly increases its thermal and structural stability without any loss of function, making gLtEc an attractive blood substitute for deployment in remote areas and battlefields. © 2017 American Institute of Chemical Engineers Biotechnol. Prog., 34:521-528, 2018.

| S-EPMC5911234 | biostudies-literature

Nanoplastic Transport in Soil via Bioturbation by Lumbricus terrestris.

Project description:Plastic pollution is increasingly perceived as an emerging threat to terrestrial environments, but the spatial and temporal dimension of plastic exposure in soils is poorly understood. Bioturbation displaces microplastics (>1 μm) in soils and likely also nanoplastics (<1 μm), but empirical evidence is lacking. We used a combination of methods that allowed us to not only quantify but to also understand the mechanisms of biologically driven transport of nanoplastics in microcosms with the deep-burrowing earthworm Lumbricus terrestris. We hypothesized that ingestion and subsurface excretion drives deep vertical transport of nanoplastics that subsequently accumulate in the drilosphere, i.e., burrow walls. Significant vertical transport of palladium-doped polystyrene nanoplastics (diameter 256 nm), traceable using elemental analysis, was observed and increased over 4 weeks. Nanoplastics were detected in depurated earthworms confirming their uptake without any detectable negative impact. Nanoplastics were indeed enriched in the drilosphere where cast material was visibly incorporated, and the reuse of initial burrows could be monitored via X-ray computed tomography. Moreover, the speed of nanoplastics transport to the deeper soil profile could not be explained with a local mixing model. Earthworms thus repeatedly ingested and excreted nanoplastics in the drilosphere calling for a more explicit inclusion of bioturbation in nanoplastic fate modeling under consideration of the dominant mechanism. Further investigation is required to quantify nanoplastic re-entrainment, such as during events of preferential flow in burrows.

| S-EPMC8697554 | biostudies-literature

Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris.

Project description:We have determined the complete nucleotide (nt) sequence of the mitochondrial genome of an oligochaete annelid, the earthworm Lumbricus terrestris. This genome contains the 37 genes typical of metazoan mitochondrial DNA (mtDNA), including ATPase8, which is missing from some invertebrate mtDNAs. ATPase8 is not immediately upstream of ATPase6, a condition found previously only in the mtDNA of snails. All genes are transcribed from the same DNA strand. The largest noncoding region is 384 nt and is characterized by several homopolymer runs, a tract of alternating TA pairs, and potential secondary structures. All protein-encoding genes either overlap the adjacent downstream gene or end at an abbreviated stop codon. In Lumbricus mitochondria, the variation of the genetic code that is typical of most invertebrate mitochondrial genomes is used. Only the codon ATG is used for translation initiation. Lumbricus mtDNA is A + T rich, which appears to affect the codon usage pattern. The DHU arm appears to be unpaired not only in tRNAser(AGN), as is typical for metazoans, but perhaps also in tRNAser(UCN), a condition found previously only in a chiton and among nematodes. Relating the Lumbricus gene organization to those of other major protostome groups requires numerous rearrangements.

| S-EPMC1206728 | biostudies-other

Wheat (Triticum aestivum L.) transcriptome profiling

Project description:Transcript changes in response to low temperature

2014-12-31 | GSE58805 | GEO

Effects of Three Pesticides on the Earthworm Lumbricus terrestris Gut Microbiota.

Project description:Earthworms play a vital role in the terrestrial ecosystem functioning and maintenance of soil fertility. However, many pesticides, for example, imidacloprid, benomyl, and metribuzin that are world-widely used in agriculture, may be potentially dangerous to earthworms. At the same time, standard tests for pesticides acute and chronic toxicity do not reflect all aspects of their negative impact and might not be enough sensitive for effective assessment. In this paper, we studied the effects of non-lethal concentrations of imidacloprid, benomyl, and metribuzin on the gut bacterial community of Lumbricus terrestris using high-throughput sequencing approach. We found that pesticides reduced the total bacterial diversity in the earthworm's gut even at the recommended application rate. Under the applied pesticides, the structure of the gut prokaryotic community underwent changes in the relative abundance of the phyla Proteobacteria, Actinobacteria, Acidobacteria, Planctomyces, Verrucomicrobia, and Cyanobacteria, as well as the genera Haliangium, Gaiella, Paenisporosarcina, Oryzihumus, Candidatus Udaeobacter, and Aquisphaera. Moreover, the pesticides affected the abundance of Verminephrobacter-the earthworms' nephridia specific symbionts. In general, the negative impact of pesticides on bacterial biodiversity was significant even under pesticides content, which was much lower than their acute and chronic toxicity values for the earthworms. These results highlighted the fact that the earthworm's gut microbial community is highly sensitive to soil contamination with pesticides. Therefore, such examination should be considered in the pesticide risk assessment protocols.

| S-EPMC9004718 | biostudies-literature

The genome sequence of the common earthworm, Lumbricus terrestris (Linnaeus, 1758).

Project description:We present a genome assembly from an individual Lumbricus terrestris (the common earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 1,056.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.93 kilobases in length.

| S-EPMC10799228 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data