Dataset Information

UniBioDicts: Unified access to biological dictionaries.

ABSTRACT:

Summary

We present a set of software packages that provide uniform access to diverse biological vocabulary resources that are instrumental for current biocuration efforts and tools. The Unified Biological Dictionaries (UniBioDicts or UBDs) provide a single query-interface for accessing the online API services of leading biological data providers. Given a search string, UBDs return a list of matching term, identifier and metadata units from databases (e.g. UniProt), controlled vocabularies (e.g. PSI-MI), and ontologies (e.g. GO, via BioPortal). This functionality can be connected to input fields (user-interface components) that offer autocomplete lookup for these dictionaries. UBDs create a unified gateway for accessing life science concepts, helping curators find annotation terms across resources (based on descriptive metadata and unambiguous identifiers), and helping data users search and retrieve the right query terms.

Availability and implementation

The UBDs are available through npm and the code is available in the GitHub organisation UniBioDicts under the Affero GPL license.

Supplementary information

Further information on the related project VSM is available at https://vsm.github.io.

SUBMITTER: Zobolas J

PROVIDER: S-EPMC8034525 | biostudies-literature |

REPOSITORIES: biostudies-literature

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