Browse
Submit Data
Databases
API
Help

Dataset Information

19 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

[Ag₉(1,2-BDT)₆]^3-: How Square-Pyramidal Building Blocks Self-Assemble into the Smallest Silver Nanocluster.

ABSTRACT: The emerging promise of few-atom metal catalysts has driven the need for developing metal nanoclusters (NCs) with ultrasmall core size. However, the preparation of metal NCs with single-digit metallic atoms and atomic precision is a major challenge for materials chemists, particularly for Ag, where the structure of such NCs remains unknown. In this study, we developed a shape-controlled synthesis strategy based on an isomeric dithiol ligand to yield the smallest crystallized Ag NC to date: [Ag₉(1,2-BDT)₆]^3- (1,2-BDT = 1,2-benzenedithiolate). The NC's crystal structure reveals the self-assembly of two Ag square pyramids through preferential pyramidal vertex sharing of a single metallic Ag atom, while all other Ag atoms are incorporated in a motif with thiolate ligands, resulting in an elongated body-centered Ag₉ skeleton. Steric hindrance and arrangement of the dithiolated ligands on the surface favor the formation of an anisotropic shape. Time-dependent density functional theory based calculations reproduce the experimental optical absorption features and identify the molecular orbitals responsible for the electronic transitions. Our findings will open new avenues for the design of novel single-digit metal NCs with directional self-assembled building blocks.

SUBMITTER: Alamer BJ

PROVIDER: S-EPMC8041283 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

All three IP3 receptor subtypes generate Ca2+ puffs, the universal building blocks of IP3-evoked Ca2+ signals.

Project description:All three subtypes of inositol 1,4,5-trisphosphate receptor (IP3R) are intracellular Ca2+ channels that are co-regulated by IP3 and Ca2+ This allows IP3Rs to evoke regenerative Ca2+ signals, the smallest of which are Ca2+ puffs that reflect the coordinated opening of a few clustered IP3Rs. We use total internal reflection microscopy (TIRF) microscopy to record Ca2+ signals in HEK cells expressing all three IP3R subtypes or a single native subtype. Ca2+ puffs are less frequent in cells expressing one IP3R subtype, commensurate with them expressing fewer IP3Rs than wild-type cells. However, all three IP3R subtypes generate broadly similar Ca2+ puffs with similar numbers of IP3Rs contributing to each. This suggests that IP3R clusters may be assembled by conserved mechanisms that generate similarly sized clusters across different IP3R expression levels. The Ca2+ puffs evoked by IP3R2 had slower kinetics and more prolonged durations, which may be due to IP3 binding with greater affinity to IP3R2. We conclude that Ca2+ puffs are the building blocks for the Ca2+ signals evoked by all IP3Rs.

| S-EPMC6127726 | biostudies-literature

Removal of the A10 adenosine in a DNA-stabilized Ag16 nanocluster.

Project description:The role of the terminal adenosine (A10) on the spectroscopic and structural properties of a previously described DNA-stabilized Ag16 nanocluster (DNA:Ag16NC) is presented. In the original DNA:Ag16NCs (5'-CACCTAGCGA-3'), the A10 nucleobase was involved in an Ag+-mediated interaction with an A10 in a neighboring asymmetric unit, and did not interact with the Ag16NC. Therefore, we synthesized AgNCs embedded in the corresponding 9-base sequence in order to investigate the crystal structure of these new DNA-A10:Ag16NCs and analyze the photophysical properties of the solution and crystalline state. The X-ray crystallography and spectroscopic measurements revealed that the 3'-end adenosine has little importance with respect to the photophysics and structure of the Ag16NCs. Additionally, the new crystallographic data was recorded with higher spatial resolution leading to a more detailed insight in the interactions between the nucleotides and Ag atoms.

| S-EPMC9054913 | biostudies-literature

Geometric requirements and examples of important structures in the assembly of square building blocks.

Project description:The basic structures for linking squares into polyhedra and networks (reticulation) are enumerated, and corresponding examples are described in which crystals were synthesized by linking paddle wheel (square) units into metal-organic frameworks (MOFs)--named MOF-102 to MOF-112.

| S-EPMC122691 | biostudies-literature

A New Systematic Construction of Novel Three-Dimensional Spin Crossover Coordination Polymers Based on the [AgI 2(CN)3] Building Unit.

Project description:New three-dimensional spin crossover (SCO) coordination polymers systematically constructed by the novel building unit [AgI 2(CN)3], FeII(3-Br-5-CH3pyridine)2[AgI 2(CN)3][AgI(CN)2] (1), FeII(3-Br-5-Clpyridine)2[AgI 2(CN)3][AgI(CN)2] (2), and FeII(3,5-Brpyridine)2[AgI 2(CN)3][AgI(CN)2] (3), have been synthesized and characterized. The bismonodentate binuclear [Ag2(CN)3]- and mononuclear [AgI(CN)2]- units and FeII atoms assemble to form a 3D network structure. The structures of 1-3 are crystallographically identical, which made up the triply interpenetration combined with complicated intermolecular interactions including Ag···Ag, Ag···X (pyridine substituents) and π-stacking interactions. Magnetic and differential scanning calorimetry studies were performed for 1-3. These compounds display a similar SCO behavior, while the critical temperatures (T c) are shifted by the substituent effect. Due to the identical structures of 1-3, the order of T c clearly corresponds with the Hammett constant.

| S-EPMC8154166 | biostudies-literature

Ag Nanocluster-Enhanced Scintillation Properties of Borophosphate Glasses Doped with CsPbBr3 Quantum Dots.

Project description:A novel and effective method to improve scintillation properties of glass-ceramics, such as intensity enhancement and decay-time shortening, is reported in this work. Compared with crystal scintillators, glass scintillators always have the problems of low efficiency and long decay; how to solve them has always been a scientific puzzle in the field of scintillation glass-ceramics. The plasma enhancement effect can be predicted to solve the above problems. Ag+ ions were diffused into glasses by ion exchange, and then Ag nanoparticles and CsPbBr3 quantum dots were formed by heat treatment. The structure of the CsPbBr3 perovskite consists of a series of shared corner PbBr6 octahedra with Cs ions occupying the cuboctahedral cavities. By using Ag and the plasma resonance effect, the photoluminescence intensity of CsPbBr3 quantum dot glasses was enhanced by 3 times, its radioluminescence intensity increased by 6.25 times, and its decay time was reduced by a factor of more than one. Moreover, the mechanism of photoluminescence and radioluminescence enhanced by Ag and plasma was discussed based on the experimental results and finite-difference time-domain method. We concluded that the increase in radioluminescence intensity was related to plasma enhancements and the energy exchange between Ag nanoclusters and CsPbBr3 quantum dots. Doping Ag is a valid means to improve the scintillation luminescence of CsPbBr3 quantum dot glasses, which can be applied in the field of scintillation.

| S-EPMC9330410 | biostudies-literature

Carboxylic acid stimulated silver shell isomerism in a triple core-shell Ag84 nanocluster.

Project description:Isomerization is highly important in all aspects of science, yet it is rarely observed in nanoscience. Here, we synthesized a unique triple core-shell Ag84 nanocluster displaying isomerism, which is controlled by different carboxylic acids and a one-way transformation (SD/Ag84a → SD/Ag84b). The innermost core is a rare Ag10 nanocluster which comprises an Ag6 octahedral unit as seen in face-centred cubic (fcc) silver metal and four capped Ag atoms. It templates two crescent-shaped polyoxometalate (W7O26)10- shells which are then enclosed in a shell of silver shaped as rugby balls. The organic ligands (iPrS-, n PrCOO- and PhCOO-) finally shield the metallic clusters. Due to slight differences in structure at two poles and the steric hindrance of n PrCOO- and PhCOO-, SD/Ag84a and SD/Ag84b adopt the shapes of flat-headed and cuspidal prolate spheres, respectively. Interestingly, PhCOOH is dominant over n PrCOOH whereby crystals of SD/Ag84b were isolated if PhCOOH is added during the synthesis of SD/Ag84a. This demonstrates that PhCOOH not only alters the organic coats but also induces metal shell re-organization. This work reveals carboxylate-controlled skeletal isomerism in silver nanoclusters for the first time, thus deepening the understanding of silver nanocluster assembly, flexibility and reactivity.

| S-EPMC6520922 | biostudies-literature

Selective Anion Binding Drives the Formation of AgI8L6 and AgI12L6 Six-Stranded Helicates.

Project description:Here we describe the formation of an unexpected and unique family of hollow six-stranded helicates. The formation of these structures depends on the coordinative flexibility of silver and the 2-formyl-1,8-napthyridine subcomponent. Crystal structures show that these assemblies are held together by Ag4I, Ag4Br, or Ag6(SO4)2 clusters, where the templating anion plays an integral structure-defining role. Prior to the addition of the anionic template, no six-stranded helicate was observed to form, with the system instead consisting of a dynamic mixture of triple helicate and tetrahedron. Six-stranded helicate formation was highly sensitive to the structure of the ligand, with minor modifications inhibiting its formation. This work provides an unusual example of mutual stabilization between metal clusters and a self-assembled metal-organic cage. The selective preparation of this anisotropic host demonstrates new modes of guiding selective self-assembly using silver(I), whose many stable coordination geometries render design difficult.

| S-EPMC7879535 | biostudies-literature

[Ag115S34(SCH2C6H4t Bu)47(dpph)6]: synthesis, crystal structure and NMR investigations of a soluble silver chalcogenide nanocluster.

Project description:With the aim to synthesize soluble cluster molecules, the silver salt of (4-(tert-butyl)phenyl)methanethiol [AgSCH2C6H4t Bu] was applied as a suitable precursor for the formation of a nanoscale silver sulfide cluster. In the presence of 1,6-(diphenylphosphino)hexane (dpph), the 115 nuclear silver cluster [Ag115S34(SCH2C6H4t Bu)47(dpph)6] was obtained. The molecular structure of this compound was elucidated by single crystal X-ray analysis and fully characterized by spectroscopic techniques. In contrast to most of the previously published cluster compounds with more than a hundred heavy atoms, this nanoscale inorganic molecule is soluble in organic solvents, which allowed a comprehensive investigation in solution by UV-Vis spectroscopy and one- and two-dimensional NMR spectroscopy including 31P/109Ag-HSQC and DOSY experiments. These are the first heteronuclear NMR investigations on coinage metal chalcogenides. They give some first insight into the behavior of nanoscale silver sulfide clusters in solution. Additionally, molecular weight determinations were performed by 2D analytical ultracentrifugation and HR-TEM investigations confirm the presence of size-homogeneous nanoparticles present in solution.

| S-EPMC5408567 | biostudies-literature

Revealing the chirality origin and homochirality crystallization of Ag14 nanocluster at the molecular level.

Project description:Although chirality is an ever-present characteristic in biology and some artificial molecules, controlling the chirality and demystifying the chirality origin of complex assemblies remain challenging. Herein, we report two homochiral Ag14 nanoclusters with inherent chirality originated from identical rotation of six square faces on a Ag8 cube driven by intra-cluster π···π stacking interaction between pntp- (Hpntp = p-nitrothiophenol) ligands. The spontaneous resolution of the racemic (SD/rac-Ag14a) to homochiral nanoclusters (SD/L-Ag14 and SD/R-Ag14) can be realized by re-crystallizing SD/rac-Ag14a in acetonitrile, which promotes the homochiral crystallization in solid state by forming C-H···O/N hydrogen bonds with nitro oxygen atoms in pntp- or aromatic hydrogen atoms in dpph (dpph = 1,6-bis(diphenylphosphino)hexane) on Ag14 nanocluster. This work not only provides strategic guidance for the syntheses of chiral silver nanoclusters in an all-achiral environment, but also deciphers the origin of chirality at molecular level by identifying the special effects of intra- and inter-cluster supramolecular interactions.

| S-EPMC8371133 | biostudies-literature

Real-space imaging with pattern recognition of a ligand-protected Ag374 nanocluster at sub-molecular resolution.

Project description:High-resolution real-space imaging of nanoparticle surfaces is desirable for better understanding of surface composition and morphology, molecular interactions at the surface, and nanoparticle chemical functionality in its environment. However, achieving molecular or sub-molecular resolution has proven to be very challenging, due to highly curved nanoparticle surfaces and often insufficient knowledge of the monolayer composition. Here, we demonstrate sub-molecular resolution in scanning tunneling microscopy imaging of thiol monolayer of a 5 nm nanoparticle Ag374 protected by tert-butyl benzene thiol. The experimental data is confirmed by comparisons through a pattern recognition algorithm to simulated topography images from density functional theory using the known total structure of the Ag374 nanocluster. Our work demonstrates a working methodology for investigations of structure and composition of organic monolayers on curved nanoparticle surfaces, which helps designing functionalities for nanoparticle-based applications.

| S-EPMC6063937 | biostudies-literature