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Hive Panel Explorer: an interactive network visualization tool.

ABSTRACT:

Motivation

Networks are used to relate topological structure to system dynamics and function, particularly in ecology systems biology. Network analysis is often guided or complemented by data-driven visualization. Hive one of many network visualizations, distinguish themselves as providing a general, consistent and coherent rule-based representation to motivate hypothesis development and testing.

Results

Here, we present HyPE, Hive Panel Explorer, a software application that creates a panel of interactive hive plots. HyPE enables network exploration based on user-driven layout rules and parameter combinations for simultaneous of multiple network views. We demonstrate HyPE's features by exploring a microbial co-occurrence network constructed from forest soil microbiomes.

Availability and implementation

HyPE is available under the GNU license: https://github.com/hallamlab/HivePanelExplorer.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Perez SEI

PROVIDER: S-EPMC8058766 | biostudies-literature |

REPOSITORIES: biostudies-literature

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