Browse
Submit Data
Databases
API
Help

Dataset Information

12 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A review of the taxonomy of spiny-backed orb-weaving spiders of the subfamily Gasteracanthinae (Araneae, Araneidae) in Thailand.

ABSTRACT: Spiny-backed orb-weaving spiders of the subfamily Gasteracanthinae are broadly distributed in the Old World. Despite their use as a model species in biology, evolution, and behavior because of their extraordinary characteristics, the systematics of this group of spiders are still poorly understood. This study elucidates the systematics of Gasteracanthinae in Thailand based on morphological and molecular-based analyses. In total, seven species from three genera, namely Gasteracantha, Macracantha, and Thelacantha, were recorded in Thailand. Shape of abdominal spines, pattern of sigilla, and female genitalia are significant characters for species identification. In contrast, coloration shows highly intraspecific variation in most species within Gasteracanthinae. A phylogenetic tree based on partial sequences of COI, 16S, and H3 genes recovered Gasteracanthinae as a monophyletic group and supports the existence of three clades. Gasteracantha hasselti is placed as a sister taxon to Macracantha arcuata. Hence, we propose to transfer G. hasselti to Macracantha. Moreover, molecular species delimitation analyses (ABGD, bPTP, and GMYC) using 675 bp of COI gene support all nominal species, with evidence of possible additional cryptic species.

SUBMITTER: Macharoenboon K

PROVIDER: S-EPMC8065025 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Geometric regularity in webs of non-orb-weaving spiders.

Project description:Geometric regularity of spider webs has been intensively studied in orb-weaving spiders, although it is not exclusive of orb weavers. Here, we document the geometrically regular, repetitive elements in the webs of the non-orb-weaving groups Leptonetidae and Telemidae for the first time. Similar to orb weavers, we found areas with regularly spaced parallel lines in the webs of Calileptoneta helferi, Sulcia sp., and cf. Pinelema sp. Furthermore, we provide a detailed account of the regular webs of Ochyrocera (Ochyroceratidae). The sections of the web with regularly disposed parallel lines are built as U-shaped modules reminiscent of orb webs. It has been suggested that the regularly spaced parallel lines in the webs of Ochyroceratidae and Psilodercidae may be produced in a single sweep of their posterior lateral spinnerets, which have regularly spaced aciniform gland spigots, perhaps involving expansion of the spinnerets. To test this hypothesis, we compared the spacing between parallel lines with the spacing between spigots, searched for expansible membranes in the spinnerets, and examined the junctions of regularly spaced lines. The distance between parallel lines was 10-20 times the distance between spigots, and we found no expansible membranes, and the intersection of parallel lines are cemented, which opposes the single sweep hypothesis. Furthermore, we found cues of viscid silk in the parallel lines of the psilodercid Althepus and broadened piriform gland spigots that may be responsible of its production. Finally, we evaluated the presence or absence of geometrically regular web elements across the spider tree of life. We found reports of regular webs in 31 spider families, including 20 families that are not orb weavers and hypothesize that the two basic aspects of regularity (parallel lines spaced at regular intervals, and radial lines spaced at regular angles) probably appeared many times in the evolution of spiders.

| S-EPMC10019946 | biostudies-literature

The complete mitochondrial genome of an orb-weaver spider Araneus angulatus (Araneae: Araneidae).

Project description:The complete mitochondrial genome of an orb-weaver spider Araneus angulatus is 14,205 bp in length and contains 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a control region. The A + T content of the major strand is 75.4%. Nine of the protein-coding genes are initiated by typical ATN codons, one gene (COI) starts with TTA and other three genes (ND6, COII, and COIII) begin with TTG. The truncated stop codon (T) occurs in ND3, ND4L, and ND6, whereas the rest ten genes end with the canonical stop codon (TAA and TAG). Fifteen tRNAs lack the potential to form the typically cloverleaf-shaped secondary structure. The control region is 649 bp in length and contains a long tandem repeat region. The result of phylogenetic analysis shows that the relationship of A. angulatus was close to the species in the same family Araneidae.

| S-EPMC7707736 | biostudies-literature

Revision of the orb-weaver spider genus Gea C.L. Koch, 1843 (Araneae, Araneidae) from China

Project description: Not available

| S-EPMC10873805 | biostudies-literature

Sexually dimorphic venom proteins in long-jawed orb-weaving spiders (Tetragnatha) comprise novel gene families.

Project description:Venom has been associated with the ecological success of many groups of organisms, most notably reptiles, gastropods, and arachnids. In some cases, diversification has been directly linked to tailoring of venoms for dietary specialization. Spiders in particular are known for their diverse venoms and wide range of predatory behaviors, although there is much to learn about scales of variation in venom composition and function. The current study focuses on venom characteristics in different sexes within a species of spider. We chose the genus Tetragnatha (Tetragnathidae) because of its unusual courtship behavior involving interlocking of the venom delivering chelicerae (i.e., the jaws), and several species in the genus are already known to have sexually dimorphic venoms. Here, we use transcriptome and proteome analyses to identify venom components that are dimorphic in Tetragnatha versicolor. We present cDNA sequences including unique, male-specific high molecular weight proteins that have remote, if any, detectable similarity to known venom components in spiders or other venomous lineages and have no detectable homologs in existing databases. While the function of these proteins is not known, their presence in association with the cheliceral locking mechanism during mating together with the presence of prolonged male-male mating attempts in a related, cheliceral-locking species (Doryonychus raptor) lacking the dimorphism suggests potential for a role in sexual communication.

| S-EPMC5985773 | biostudies-literature

Two new species of the orb-weaver genus Chorizopes from Yunnan, China (Araneae, Araneidae).

Project description:Two new species of the orb-weaver genus Chorizopes from Yunnan Province, China are described: Chorizopes albussp. n. (male and female) from the Gaoligong Mountains and Ailao Mountains, and Chorizopes longussp. n. (male and female) from the Gaoligong Mountains. Chorizopes albussp. n. can be distinguished from the related species Chorizopes shimenensis by: 1) median apophysis widest at the middle part versus widest at the base in the latter; 2) median apophysis without the dorsal spur found in that of the latter; 3) spermathecae spherical versus ovoid in the latter; 4) having one pair of large white spots on posterior lateral area of abdomen versus having two pairs of crescent white patches with dark edges on dorsal abdomen in the latter. Chorizopes longussp. n. can be separated from the similar species Chorizopes tumens by: 1) the median apophysis having a knob on the distal half versus having a knob on the basic half in the latter; 2) male palp having a spur versus absent in the latter; 3) the width of the groove between the paracymbium and cymbium as thick as the paracymbium versus two times as thick as the paracymbium in the latter; 4) copulatory duct attached on anterior ventral of the spermatheca versus on anterior dorsal in the latter. Photos of body and copulatory organs, line drawings of copulatory organs, as well as the distribution data are provided. The type specimens are deposited in the College of Life Sciences, at the Hunan Normal University (HNU) and the Museum of Tongren University (MTU).

| S-EPMC5096370 | biostudies-literature

Description of two species of the orb-weaver spider genus Argiope Audouin, 1826 (Araneae, Araneidae) from Xizang, China.

Project description:BackgroundThe spider genus Argiope Audouin, 1826, comprises 88 species worldwide, including 23 species occurring in China. Two Argiope species were collected by the spider survey on Yarlung Zangbo Grand Canyon National Nature Reserve, Xizang, southwest China, conducted in 2023.New informationTwo species of the orb-weaver spider genus Argiope from Xizang, China are described, including a new species, A.beibeng Mi & Wang, sp. nov. (♂♀) and a known species, A.caesarea Thorell, 1897 (♂♀). The unknown male of A.caesarea is described for the first time.

| S-EPMC11250172 | biostudies-literature

Orb-weaving spiders are fewer but larger and catch more prey in lit bridge panels from a natural artificial light experiment.

Project description:Artificial light at night is rapidly changing the sensory world. While evidence is accumulating for how insects are affected, it is not clear how this impacts higher trophic levels that feed on insect communities. Spiders are important insect predators that have recently been shown to have increased abundance in urban areas, but have shown mixed responses to artificial light. On a single bridge with alternating artificially lit and unlit sections, I measured changes in the orb-weaving spider Larinioides sclopetarius (Araneidae) web abundance, web-building behavior, prey-capture, and body condition. In artificially lit conditions, spiders caught more prey with smaller webs, and had higher body conditions. However, there were fewer spiders with active webs in those lit areas. This suggests that either spiders were not taking advantage of an ecological insect trap, perhaps due to an increased risk of becoming prey themselves, or were satiated, and thus not as active within these habitats. The results from this natural experiment may have important consequences for both insects and spiders in urban areas under artificial lighting conditions.

| S-EPMC7083158 | biostudies-literature

Orb-weaving spider Araneus ventricosus genome elucidates the spidroin gene catalogue.

Project description:Members of the family Araneidae are common orb-weaving spiders, and they produce several types of silks throughout their behaviors and lives, from reproduction to foraging. Egg sac, prey capture thread, or dragline silk possesses characteristic mechanical properties, and its variability makes it a highly attractive material for ecological, evolutional, and industrial fields. However, the complete set of constituents of silks produced by a single species is still unclear, and novel spidroin genes as well as other proteins are still being found. Here, we present the first genome in genus Araneus together with the full set of spidroin genes with unamplified long reads and confirmed with transcriptome of the silk glands and proteome analysis of the dragline silk. The catalogue includes the first full length sequence of a paralog of major ampullate spidroin MaSp3, and several spider silk-constituting elements designated SpiCE. Family-wide phylogenomic analysis of Araneidae suggests the relatively recent acquisition of these genes, and multiple-omics analyses demonstrate that these proteins are critical components in the abdominal spidroin gland and dragline silk, contributing to the outstanding mechanical properties of silk in this group of species.

| S-EPMC6557832 | biostudies-literature

Modular evolution of egg case silk genes across orb-weaving spider superfamilies.

Project description:Spider silk proteins (fibroins) are renowned for their extraordinary mechanical properties and biomimetic potential. Despite extensive evolutionary, ecological, and industrial interest in these fibroins, only a fraction of the known silk types have been characterized at the molecular level. Here we report cDNA and genomic sequences of the fibroin TuSp1, which appears to be the major component of tubuliform gland silk, a fiber exclusively synthesized by female spiders for egg case construction. We obtained TuSp1 sequences from 12 spider species that represent the extremes of phylogenetic diversity within the Orbicularia (orb-weaver superfamilies, Araneoidea and Deinopoidea) and finer scale sampling within genera. TuSp1 encodes tandem arrays of an approximately 200-aa-long repeat unit and individual repeats are readily aligned, even among species that diverged >125 million years ago. Analyses of these repeats across species reveal the strong influence of concerted evolution, resulting in intragenic homogenization. However, deinopoid TuSp1 repeats also contain insertions of coding, minisatellite-like sequences, an apparent result of replication slippage and nonreciprocal recombination. Phylogenetic analyses of 37 spider fibroin sequences support the monophyly of TuSp1 within the spider fibroin gene family, consistent with a single origin of this ortholog group. The diversity of taxa and silks examined here confirms that repetitive architecture is a general feature of this gene family. Moreover, we show that TuSp1 provides a clear example of modular evolution across a range of phylogenetic levels.

| S-EPMC1183556 | biostudies-literature

Properties of orb weaving spider glycoprotein glue change during Argiope trifasciata web construction.

Project description:An orb web's prey capture thread relies on its glue droplets to retain insects until a spider can subdue them. Each droplet's viscoelastic glycoprotein adhesive core extends to dissipate the forces of prey struggle as it transfers force to stiffer, support line flagelliform fibers. In large orb webs, switchback capture thread turns are placed at the bottom of the web before a continuous capture spiral progresses from the web's periphery to its interior. To determine if the properties of capture thread droplets change during web spinning, we characterized droplet and glycoprotein volumes and material properties from the bottom, top, middle, and inner regions of webs. Both droplet and glycoprotein volume decreased during web construction, but there was a progressive increase in the glycoprotein's Young's modulus and toughness. Increases in the percentage of droplet aqueous material indicated that these increases in material properties are not due to reduced glycoprotein viscosity resulting from lower droplet hygroscopicity. Instead, they may result from changes in aqueous layer compounds that condition the glycoprotein. A 6-fold difference in glycoprotein toughness and a 70-fold difference in Young's modulus across a web documents the phenotypic plasticity of this natural adhesive and its potential to inspire new materials.

| S-EPMC6937294 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data