Browse
Submit Data
Databases
API
Help

Dataset Information

17 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Characterization of the complete mitochondrial genome of Omosita colon (Coleoptera: Nitidulidae).

ABSTRACT: Omosita colon (Linnaeus, 1758) (Coleoptera: Nitidulidae) is an economically important storage pest worldwide and a forensically important beetle. The first complete mitochondrial genome (mitogenome) of O. colon was sequenced in this study using the next-generation sequencing. The mitogenome of O. colon is circular with a total length of 16,544 bp, which consists of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a non-coding control region. The order and orientation of genes were identical with that of the ancestral insects. This study provides genomic data for mitogenome library of the genus Omosita to investigate evolutionary and systematic studies. It also provides a molecular basis to infer the postmortem interval (PMI_min) with O. colon.

SUBMITTER: Xu W

PROVIDER: S-EPMC8078925 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Complete Mitochondrial Genome Sequence of Aethina tumida (Coleoptera: Nitidulidae), a Beekeeping Pest.

Project description:We report here the full mitochondrial genome sequence of Aethina tumida, a Nitidulidae species beetle, that is a pest of bee hives. The obtained sequence is 16,576 bp in length and contains 13 protein-coding genes, 2 rRNA genes, and 22 tRNAs.

| S-EPMC5668533 | biostudies-literature

Characterization of the complete mitochondrial genome of Purpuricenus temminckii (Coleoptera: Cerambycidae).

Project description:The complete mitochondrial genome of Purpuricenus temminckii (GenBank accession number MN527358) is 15,689?bp in length, and contains 13 protein-coding genes, 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes, and a putative control region. The overall base composition is A (39.56%), C (17.52%), G (10.90%), and T (32.02%), with a high AT bias of 71.58%. All tRNAs have the typical cloverleaf structure except for trnS1 and the length of them range from 62 to 71?bp. Phylogenetic tree showed that P. temminckii was clustered with three Cerambycidae species, which agree with the traditional classification.

| S-EPMC7707786 | biostudies-literature

Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae).

Project description:We sequenced, assembled, and annotated the complete mitochondrial genome of the seed beetle Caryopemon giganteus, which represents the first report in the tribe Caryopemini from the subfamily Bruchinae of Chrysomelidae. The circular mitochondrial genome of the species contains 15,727 bases, 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and a non-coding region. The GC content of the genome is 25.3%, which is higher than any other reported mitochondrial genomes within Bruchinae. The 16S ribosomal RNA gene and the 12S ribosomal RNA gene are 1284 and 835 bp in length, respectively. 12 PCGs started with the typical ATN codon, except for ND1 initiated with TTG. Five PCGs have the typical stop codon of TAA or TGA, while the remainder PCGs are terminated with incomplete stop codons (TA or T). The phylogenetic analysis based on a combination of 13 genes of the mitochondrial genomes of six species of Bruchinae and 23 species from other 10 subfamilies of Chrysomelidae recovered a generally well resolved and strongly supported tree topology, which shows that C. giganteus has the basalmost position in Bruchinae.

| S-EPMC7748735 | biostudies-literature

The complete mitochondrial genome of Smaragdina nigrifrons (Coleoptera: Eumolpidae): characterization and phylogenetic position.

Project description:The complete mitogenome of Smaragdina nigrifrons (GenBank accession number MN584924) is 15,903 bp in length, and includes 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes, and a control region. The overall base composition was as follows: A, 38.18%; T, 35.25%; C, 15.97%; and G, 10.60%, with a total of A + T content of 73.43%. Eleven reading frame overlaps and thirteen intergenic regions were found in the mitogenome of S. nigrifrons. All 13 PCGs are initiated with the typical ATN codons, and are terminated with either the complete TAA/TAG codons or a single T residue. All tRNAs possess the typical cloverleaf secondary structures except for trnS1 (AGN). Phylogenetic analyses showed that S. nigrifrons was closely related to Cucujus clavipes, which was consistent with the conventional taxonomy.

| S-EPMC7707656 | biostudies-literature

Characterization of the complete mitochondrial genome of Pseudorhaetus sinicus Boileau, 1899 (Coleoptera: Lucanidae).

Project description:Pseudorhaetus sinicus is a stag beetle common to China and Vietnam, but whose distribution is limited within China. Little is known about the molecular biological characteristics of this species, so we characterized its complete mitochondrial genome (GenBank accession number MZ504793.1). The mitogenome consists of a circular DNA molecule of 18,126 bp, with 67.693% AT content. It contains 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have typical ATN (Met) start codons and TAN stop codons. Phylogenetic analysis suggests that P. sinicus is closely related to Prosopocoilus confucius. This newly described mitochondrial genome provides a valuable resource for the phylogenetic analysis of Lucanidae beetles.

| S-EPMC8604539 | biostudies-literature

Phylogenetic relationship and characterization of the complete mitochondrial genome of Mylabris calida (Coleoptera:Meloidae).

Project description:Beetle genus Mylabris (Meloidae) was described by Fabricius (1775) and had been well known due to its relevance to traditional medicine (e.g., cantharidin production). Here, we sequenced and annotated the mitochondrial genome (mitogenome) of Mylabris calida, one of species within Mylabris. This mitogenome was 15,149 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs) and two ribosomal RNA unit genes (rRNAs). All 13 PCGs were initiated by the ATN (ATG, ATT and ATA) codon. All PCGs terminated with the stop codon TAA or TAG except for cox1, cox2, nad5 and nad4 which end with the incomplete codon T-. Phylogenetic analysis showed that M. calida got together with the same genus species Mylabris sp., M. aulica and three Hycleus species (H. cichorii, H. phaleratus and H. marcipoli), indicating Mylabris has a closer relationship with Hycleus than other genera within Meloidae.

| S-EPMC7782164 | biostudies-literature

Phylogenetic relationship and characterization of the complete mitochondrial genome of Cheilomenes sexmaculata (Coleoptera: Coccinellidae).

Project description:Cheilomenes sexmaculata is a common natural enemy for aphid and psyllid in agricultural systems in South China. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of C. sexmaculata. This mitogenome was 17,297 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs) and two ribosomal RNA unit genes (rRNAs). Gene order was conserved and identical to most other previously sequenced Coccinellidae. All PCGs of C. sexmaculata have the conventional start codon for invertebrate mitochondrial PCGs (ATN), with the exception of cox1 (AAT) and nad3 (TTG). Except for seven genes (cox1, cox2, cox3, nad3, nad5, nad4 and nad6) end with the incomplete stop codon T-, all other PCGs terminated with the stop codon TAA or TAG. The whole mitogenome exhibited heavy AT nucleotide bias (78.0%). Phylogenetic analysis positioned C. sexmaculata in a well-supported clade with Aiolocaria hexaspilota. The relationships (Sticholotidinae + (Coccinellinae + (Scymninae + Epilachninae))) were supported in Coccinellidae, and Halyziini was paraphyletic to Coccinellini within Coccinellinae.

| S-EPMC8312585 | biostudies-literature

Complete mitochondrial genome of Cyllorhynchites ursulus (Coleoptera: Rhynchitidae).

Project description:The complete mitochondrial genome of Cylloryhunchites ursulus was sequenced for the first time from its whole body using the next-generation sequencing method. This mitogenome was 14,508 base pairs in length, containing 13 protein-coding genes, 20 transfer RNA genes, and two ribosomal RNA genes. Its overall A, C, G, and T contents were 37.8, 17.8, 11.1, and 33.4%, respectively. Its A?+?T content (71.2%) was higher than G?+?C content. The phylogenetic result showed that although C. ursulus is a species of family Rhynchitidae, its phylogenetic position is closely related to family Attlabidae.

| S-EPMC7800936 | biostudies-literature

Complete mitochondrial genome of Oberea diversipes (Coleoptera, Cerambycidae).

Project description:The complete mitochondrial DNA genome of the Oberea diversipes was reported. The genome was a circular molecule of 15,499 base pairs (bp), with 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an estimated 830 bp A + T-rich control region. The total base composition of the mitogenome was A-T bias, with 40.9% for A, 37.0% for T, 13.4% for C, and 8.7% for G. The molecular data presented here would be useful for further study of O. diversipes.

| S-EPMC7748853 | biostudies-literature

Complete mitochondrial genome of Niphades castanea (Coleoptera: Curculionidae).

Project description:Niphades castanea Chao is an important insect pest on many plants which belong to genus Castanea. The complete mitochondrial genome of N. castanea was sequenced and analyzed. The phylogenetic relationships between N. castanea and other 41 species in the family Curculionidae were reconstructed using maximum likelihood (ML) methods based on the concatenated nucleotide sequences, the phylogenetic analysis showed that N. castanea is closely related to Hylobitelus xiaoi, which is in accordance with the traditional morphological classification.

| S-EPMC7781971 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data