Browse
Submit Data
Databases
API
Help

Dataset Information

14 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Long-term monitoring for conservation: closing the distribution gap of Arctocephalus australis in central Chile.

ABSTRACT:

Objectives

Here, we present the first record of stable colonies of the South American fur seal (Arctocephalus australis), in an area where their presence has never been documented (hereafter distribution gap), as well as an update of the current distribution range of the species in central Chile.

Results

A national synoptic aerial census of pinnipeds was performed during the austral summer of 2019 on the Chilean coast. An additional aerial census was conducted in the same area during the austral spring of 2019 as well as a maritime census during the austral summer of 2020. The data showed the presence of South American fur seals in central Chile within their well-known distribution gap. The total abundance was registered in three colonies where fur seals were sighted: one non-breeding colony, Punta Topocalma (summer 2019: mean = 46 ± 3; spring 2019: mean = 9 ± 1); and two breeding colonies, Punta Curaumilla (summer 2019: mean = 595 ± 7; spring 2019: mean = 45 ± 4; summer 2020: mean = 744 ± 5) and Isla Santa María (summer 2019: mean = 246 ± 6). Specifically, we suggest that it is crucial to elucidate the origin of the described settled colonies, and to determine whether there has been an augment in the distribution range from either the northern population, the southern population, or both simultaneously.

SUBMITTER: Carcamo D

PROVIDER: S-EPMC8103573 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Closing the knowledge-action gap in conservation with open science.

Project description:The knowledge-action gap in conservation science and practice occurs when research outputs do not result in actions to protect or restore biodiversity. Among the diverse and complex reasons for this gap, three barriers are fundamental: knowledge is often unavailable to practitioners and challenging to interpret or difficult to use or both. Problems of availability, interpretability, and useability are solvable with open science practices. We considered the benefits and challenges of three open science practices for use by conservation scientists and practitioners. First, open access publishing makes the scientific literature available to all. Second, open materials (detailed methods, data, code, and software) increase the transparency and use of research findings. Third, open education resources allow conservation scientists and practitioners to acquire the skills needed to use research outputs. The long-term adoption of open science practices would help researchers and practitioners achieve conservation goals more quickly and efficiently and reduce inequities in information sharing. However, short-term costs for individual researchers (insufficient institutional incentives to engage in open science and knowledge mobilization) remain a challenge. We caution against a passive approach to sharing that simply involves making information available. We advocate a proactive stance toward transparency, communication, collaboration, and capacity building that involves seeking out and engaging with potential users to maximize the environmental and societal impact of conservation science.

| S-EPMC9300006 | biostudies-literature

Arctocephalus australis

Project description:Arctocephalus australis overview

| PRJNA846398 | ENA

Arctocephalus australis

Project description:Arctocephalus australis Genome sequencing

| PRJNA412509 | ENA

Complete mitochondrial genome of the South American fur seal (<i>Arctocephalus australis</i>).

Project description:The complete mitochondrial DNA sequence of the South America fur seal (Arctocephalus australis) was obtained by a shotgun sequencing approach. The mitogenome is 16,372?bp in length and includes the genes coding for the two rRNA species (12S and 16S), 13 protein-coding genes, 22 transfer RNA genes, and a control region. The base composition is 33.0% for A, 26.7% for C, 26.1 for T and 14.2% for G, with an overall GC content of 40.9%. The description of this mitogenome will be useful for further phylogeny and genetic studies on Pinnipeds.

| S-EPMC7799521 | biostudies-literature

Closing the gender gap at academic conferences: A tool for monitoring and assessing academic events.

Project description:The importance of participation in academic conferences is well known for members of the scientific community. It is not only for the feedback and the improvement of the work, it is also about career development, building networks and increasing visibility. Nevertheless, women continue to be under-represented in these academic events and even more so in the most visible positions such as speaking roles. This paper presents the development of a tool based on performance indicators, which will allow monitoring and evaluating gender roles and inequalities in academic conferences in order to tackle the underrepresentation of women. The study identifies relevant perspectives (participation, organizational structure and attitudes) and designs specific lists of performance indicators for each of them. The tool is based on a combination of two multicriteria techniques, Analytic Hierarchy Process and Analytic Hierarchy Process Sort, and a qualitative analysis based on in-depth interviews and information gathered from a focus group. The use of the AHP multi-criteria decision technique has allowed us to weight the indicators according to the opinion of several experts, and with them to be able to generate from these weightings composite indicators for each of the three dimensions. The most relevant indicators were for the participation dimension. Additionally, the tool developed has been applied to an academic conference which has been monitored in real time. The results are shown as a traffic light visualization approach, where red means bad performance, yellow average performance and green good performance, helping us to present the results for each indicator. Finally, proposals for improvement actions addressed to the red indicators are explained. The work carried out highlights the need to broaden the study of gender equality in academic conferences, not only regarding the participation but also the performance of different roles and functions.

| S-EPMC7721142 | biostudies-literature

Closing Human Reference Genome Gaps: Identifying and Characterizing Gap-Closing Sequences.

Project description:Despite continuous updates of the human reference genome, there are still hundreds of unresolved gaps which account for about 5% of the total sequence length. Given the availability of whole genome de novo assemblies, especially those derived from long-read sequencing data, gap-closing sequences can be determined. By comparing 17 de novo long-read sequencing assemblies with the human reference genome, we identified a total of 1,125 gap-closing sequences for 132 (16.9% of 783) gaps and added up to 2.2 Mb novel sequences to the human reference genome. More than 90% of the non-redundant sequences could be verified by unmapped reads from the Simons Genome Diversity Project dataset. In addition, 15.6% of the non-reference sequences were found in at least one of four non-human primate genomes. We further demonstrated that the non-redundant sequences had high content of simple repeats and satellite sequences. Moreover, 43 (32.6%) of the 132 closed gaps were shown to be polymorphic; such sequences may play an important biological role and can be useful in the investigation of human genetic diversity.

| S-EPMC7407462 | biostudies-literature

FGAP: an automated gap closing tool.

Project description:BACKGROUND:The fast reduction of prices of DNA sequencing allowed rapid accumulation of genome data. However, the process of obtaining complete genome sequences is still very time consuming and labor demanding. In addition, data produced from various sequencing technologies or alternative assemblies remain underexplored to improve assembly of incomplete genome sequences. FINDINGS:We have developed FGAP, a tool for closing gaps of draft genome sequences that takes advantage of different datasets. FGAP uses BLAST to align multiple contigs against a draft genome assembly aiming to find sequences that overlap gaps. The algorithm selects the best sequence to fill and eliminate the gap. CONCLUSIONS:FGAP reduced the number of gaps by 78% in an E. coli draft genome assembly using two different sequencing technologies, Illumina and 454. Using PacBio long reads, 98% of gaps were solved. In human chromosome 14 assemblies, FGAP reduced the number of gaps by 35%. All the inserted sequences were validated with a reference genome using QUAST. The source code and a web tool are available at http://www.bioinfo.ufpr.br/fgap/.

| S-EPMC4091766 | biostudies-literature

Topological phase transition without gap closing.

Project description:Topological phase transition is accompanied with a change of topological numbers. According to the bulk-edge correspondence, the gap closing and the breakdown of the adiabaticity are necessary at the phase transition point to make the topological number ill-defined. However, the gap closing is not always needed. In this paper, we show that two topological distinct phases can be continuously connected without gap closing, provided the symmetry of the system changes during the process. Here we propose the generic principles how this is possible by demonstrating various examples such as 1D polyacetylene with the charge-density-wave order, 2D silicene with the antiferromagnetic order, 2D silicene or quantum well made of HgTe with superconducting proximity effects and 3D superconductor Cu doped Bi2Se3. It is argued that such an unusual phenomenon can occur when we detour around the gap closing point provided the connection of the topological numbers is lost along the detour path.

| S-EPMC3784957 | biostudies-literature

B-value variations in the Central Chile seismic gap assessed by a Bayesian transdimensional approach.

Project description:The b-value can be used to characterize the seismic activity for a given earthquake catalog and provide information on the stress level accumulated at active faults. Here we develop an algorithm to objectively estimate variations of b-value along one arbitrary dimension. To this end, we employ a Bayesian transdimensional approach where the seismic domains will be self-defined according to information in the seismic catalog. This makes it unnecessary to prescribe the location and extent of domains, as it is commonly done. We first show the algorithm's robustness by performing regressions from synthetic catalogs, recovering the target models with great accuracy. We also apply the algorithm to a microseismicity catalog for the Central Chile region. This segment is considered a seismic gap where the last major earthquake with shallow slip was in 1730. Our results illuminate the downdip limit of the seismogenic zone and the transition to intraslab seismicity. In the along-strike direction, low b-value coincides with the extent of locked asperities, suggesting a high-stress loading at the Central Chile seismic gap. Our results indicate the reliability of the Bayesian transdimensional method for capturing robust b-value variations, allowing us to characterize the mechanical behavior on the plate interface of subduction zones.

| S-EPMC9755127 | biostudies-literature

Slow Long-Term Exhumation of the West Central Andean Plate Boundary, Chile.

Project description:We present a regional analysis of new low-temperature thermochronometer ages from the Central Andean fore arc to provide insights into the exhumation history of the western Andean margin. To derive exhumation rates over 10 million-year timescales, 38 new apatite and zircon (U-Th)/He ages were analyzed along six ~500-km long near-equal-elevation, coast parallel, transects in the Coastal Cordillera (CC) and higher-elevation Precordillera (PC) of the northern Chilean Andes between latitudes 18.5°S and 22.5°S. These transects were augmented with age-elevation profiles where possible. Results are synthesized with previously published thermochronometric data, corroborating a previously observed trenchward increase in cooling ages in Peru and northern Chile. One-dimensional thermal-kinematic modeling of all available multichronometer equal-elevation samples reveals mean exhumation rates of <0.2 km/Myr since ~50 Ma in the PC and ~100 Ma in the CC. Regression of pseudovertical age-elevation transects in the CC yields comparable rates of ~0.05 to ~0.12 km/Myr between ~40 and 80 Ma. Differences between the long-term mean 1-D rates and shorter-term age-elevation-derived rates indicate low variability in the exhumation history. Modeling results suggest similar background exhumation rates in the CC and PC; younger ages in the PC are largely a function of increased heat flow and consequently an elevated geothermal gradient near the arc. Slow exhumation rates are suggestive of semiarid conditions across the region since at least the Eocene and deformation and development of the Andean fore arc around this time.

| S-EPMC6120483 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data