Planar tetracoordinate fluorine atoms.
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ABSTRACT:
SUBMITTER: Castillo-Toraya G
PROVIDER: S-EPMC8132929 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Planar tetracoordinate carbon (ptC) species are scarce and exotic. Introducing four peripheral Te/Po auxiliary atoms is an effective strategy to flatten the tetrahedral structure of CAl4 (Td, 1A1). Neutral CAl4X4 (X = Te, Po) clusters possess quadrangular star structures containing perfect ptC centers. Unbiased density functional theory (DFT) searches and high-level CCSD(T) calculations suggest that these ptC species are the global minima on the potential energy surfaces. Bonding analyses indicate that 40 valence-electron (VE) is ideal for the ptC CAl4X4 (X = Te, Po): one delocalized π and three σ bonds for the CAl4 core; four lone pairs (LPs) of four X atoms, eight localized Al-X σ bonds, and four delocalized Al-X-Al π bonds for the periphery. Thus, the ptC CAl4X4 (X = Te, Po) clusters possess the stable eight electron structures and 2π + 6σ double aromaticity. Born-Oppenheimer molecular dynamics (BOMD) simulations indicate that neutral ptC CAl4X4 (X = Te, Po) clusters are robust.
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Project description:We have theoretically investigated the stability, chemical bonding, and coordination ability of the 2-Me-2-borabicyclo[1.1.0]but-1(3)-ene (2-Me-2BB) molecule using density functional theory and ab initio molecular dynamics (AIMD) simulations. Calculated results indicated that 2-Me-2BB is both thermodynamically and kinetically stable. The C=C bonds in 2-Me-2BB contain a π bond and a charge shift (CS) bond, different from those in 1-Me-borirene and cyclopropylene. Moreover, 2-Me-2BB can be a σ donor, leading to the formation of TM(2-Me-2BB)L n complexes containing planar tetracoordinate carbon (ptC) with transition metals (TM = Sc-Cu), in which the lone electron pair of 2-Me-2BB results from its ionic resonance form. The lengths and Wiberg bond indices of the TM-ptC bond in TM(2-Me-2BB)L n (TM = Sc-Cu) reveal that 2-Me-2BB can be a ligand similar to N-heterocyclic carbene. Therefore, 2-Me-2BB and its derivatives are promising molecules to obtain complexes with ptC. The natural charges on TM atoms in TM(2-Me-2BB)L n (TM = Sc-Cu) complexes range from -0.97 to 1.54e, indicating that such complexes with ptC might have potential applications in catalytic chemistry.
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Project description:The use of various oligonucleotide (ON) syntheses and post-synthetic strategies for targeted chemical modification enables improving their efficacy as potent modulators of gene expression levels in eukaryotic cells. However, the search still continues for new approaches designed for increasing internalization, lysosomal escape, and tissue specific delivery of ON. In this review we emphasized all aspects related to the synthesis and properties of ON derivatives carrying multifluorinated (MF) groups. These MF groups have unique physico-chemical properties because of their simultaneous hydrophobicity and lipophobicity. Such unusual combination of properties results in the overall modification of ON mode of interaction with the cells and making multi-fluorination highly relevant to the goal of improving potency of ON as components of new therapies. The accumulated evidence so far is pointing to high potential of ON probes, RNAi components and ON imaging beacons carrying single or multiple MF groups for improving the stability, specificity of interaction with biological targets and delivery of ONs in vitro and potentially in vivo.
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Project description:Nitrogen-based groups are usually not used as ligands to coordinate to the ptC atom. However, here we reported only nitrogen-based ligands to accomplish a theoretically successful square planar C(N)4 substructure. The first difficulty in accomplishing a square ptC(N)4 substructure is to conquer the tremendous strain from the planar to tetrahedral arrangements, and the second is to restrict it in a suitable system with the right symmetry. We designed several neutral molecules with the square ptC(N)4 substructures, and the molecules were studied using the density functional theory method at the B3LYP/6-311++G(3df,3pd) and TPSSh/6-311++G(3df,3pd) level of theory. The results of this work show that the molecules are all real minima on the potential energy surface and successfully achieved the square ptC(N)4 substructure in the theoretical method. The group orbitals among the square ptC(N)4 arrangement in the D 2d symmetry have been discussed and used to investigate the bonding interactions among all atoms in the square ptC(N)4 substructure. Usually, the ptC systems have 18 valence electrons, but the present ptC systems mentioned in this work have 24 valence electrons, which is unusual for ptC.
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Project description:The preparation and characterization of Ni(II) (1F) and Cu(II) (2F) complexes of the ligand 15,16,17,18,19,20,21,22-octafluoro-dibenzotetraaza[14]annulene (LF) are here reported. These compounds have been characterized by elemental analysis, mass and UV-vis spectroscopies, single-crystal X-ray diffraction, and computational studies. The effects due to the presence of fluorine atoms have been highlighted by comparison with the analogous complexes of the ligand LH (Ni: 1H; Cu: 2H), which bears hydrogen atoms at the benzenoid rings instead of fluorine. 1F and 2F are isostructural, with the metal ions bound to the four nitrogen atoms in a square-planar geometry and where the planar molecules are arranged in a herringbone motif in the crystal lattice. Remarkable differences in the intermolecular interactions between 1F and 2F and the corresponding H-complexes are shown by Hirshfeld surface calculations. Moreover, the effects of fluorination on the electronic structures have been investigated by density functional theory (DFT) and time-dependent DFT calculations. The compounds with LF and LH ligands present corresponding molecular orbitals (MOs) with similar shapes. Furthermore, while the presence of F-atoms lowers the energy of the MOs in comparison with those of the LH complexes, it does not remarkably affect the highest occupied molecular orbital (HOMO)-lowest unoccupied molecular orbital (LUMO) and HOMO-LUMO + 1 gaps, in agreement with the UV-vis results.
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Project description:Fluorination is one of the most effective ways to manipulate molecular packing, optical bandgap and molecular energy levels in organic semiconductor materials. In this work, different number of fluorine atoms was introduced into the acceptor moiety 2,2'-dithiophene linked 2,1,3-benzothiadiazole, utilizing the alkylthiophene modified dithieno[2,3-d:2',3'-d']benzo[1,2-b:4,5-b] (DTBDT) as the donor unit, three polymers: PDTBDT-0F-BTs, PDTBDT-2F-BTs and PDTBDT-6F-FBTs were synthesized. With the number of fluorine atoms in each repeat unit of polymers varying from 0 to 2 and then up to 6, PDTBDT-0F-BTs, PDTBDT-2F-BTs and PDTBDT-6F-FBTs exhibited gradually downshifted energy levels and improved dielectric constants (εr) from 3.4 to 4.3 to 5.8, further successively increased charge transport mobilities. As a result, the power conversion efficiency (PCE) of the bulk heterojunction organic photovoltaic devices (BHJ-OPV) from the blend films of aforementioned polymers paired with PC71BM were gradually increased from 1.69 for PDTBDT-0F-BTs to 1.89 for PDTBDT-2F-BTs and then to 5.28 for PDTBDT-6F-FBTs. The results show that the continuous insertion of fluorine atoms into the repeating units of the benzothiadiazole conjugated polymer leads to the deepening of HOMO energy level, the increase of εr and the increase of charge mobility, which improve the efficiency of charge transfer and electron collection, thus improving the photovoltaic performance of BHJ-OPV.
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Project description:In this study, we synthesized a series of fluorinated and non-fluorinated tolanes, in which one or more fluorine atoms were systematically introduced into one aromatic ring of a tolane scaffold, and systematically evaluated their photophysical properties. All the tolanes with or without fluorine substituents were found to have poor photoluminescence (PL) in tetrahydrofuran (THF) solutions. On the other hand, in the crystalline state, non-fluorinated and fluorinated tolanes with one or four fluorine atoms were less emissive, whereas fluorinated tolanes with three or five fluorine atoms exhibited high PL efficiencies (ФPL) up to 0.51. X-ray crystallographic analyses of the emissive fluorinated tolanes revealed that the position of the fluorine substituent played a key role in achieving a high ФPL. Fluorine substituents at the ortho (2/6) and para (4) positions led to tight and rigid packing due to plural π-π stacking and/or hydrogen bonding interactions, resulting in enhanced ФPL caused by the suppression of non-radiative deactivation. Additionally, fluorinated tolanes with three fluorine atoms exhibited notable aggregation-induced PL emission enhancement in THF/water mixed solvents. This demonstrates that the PL characteristics of small PL materials can be tuned depending on the usage requirements.
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