Lagenophora (Asteraceae, Astereae) in New Caledonia.
Ontology highlight
ABSTRACT:
SUBMITTER: Lannuzel G
PROVIDER: S-EPMC8137634 | biostudies-literature |
REPOSITORIES: biostudies-literature
Similar Datasets
Project description:Dysaster cajamarcensis is a spreading broad-leaved shrub named as a new genus and species of the tribe Astereae subtribe Hinterhuberinae collected in northern Peru. It has bisexual disc florets, disc style branches with strong stigmatic lines and hairy appendages, compressed achenes in both ray and disc florets, and papyraceous involucral bracts.
| S-EPMC4023341 | biostudies-literature
Project description:A new species, Diplostephiumpaposanum S.T.Ibáñez & Muñoz-Schick, sp. nov., is described for Chile, extending the southern distribution of the genus. Its position within the genus was confirmed by morphological and molecular data, discussed here. The new species was found in a coastal environment, new to the genus, and is geographically far removed from the other Chilean species, which are from the Andes. The formation where it occurs, known as lomas, acts as a biodiversity refuge in hyperarid environments. The presence of D.paposanum in this environment contributes to the evidence of a floristic connection between the Atacama Desert and the Neotropical Andes.
| S-EPMC9836661 | biostudies-literature
Project description:This study was the first report about complete chloroplast genome of Aster hypoleucus (Asteraceae, Astereae), an endemic species in Xizang (China). The circular whole cp genome of A. hypoleucus was 152,300?bp in length, contained a large single-copy (LSC) region of 84,031?bp and a small single-copy (SSC) region of 18,269?bp. These two regions were separated by a pair of inverted repeat regions (IRa and IRb), each of them 25,000?bp in length. A total of 134 functional genes were encoded, consisted of 89 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the chloroplast genome sequence was 37.3%, and the GC contents of the LSC, SSC, and IR regions were 35.2%, 31.2%, and 43.0%, respectively.
| S-EPMC7706685 | biostudies-literature
Project description:Background and aimsThe classification and phylogeny of Eurasian (EA) Aster (Asterinae, Astereae, Asteraceae) remain poorly resolved. Some taxonomists adopt a broad definition of EA Aster, whereas others favour a narrow generic concept. The present study aims to delimit EA Aster sensu stricto (s.s.), elucidate the phylogenetic relationships of EA Aster s.s. and segregate genera.MethodsThe internal and external transcribed spacers of nuclear ribosomal DNA and the plastid DNA trnL-F region were used to reconstruct the phylogeny of EA Aster through maximum parsimony and Bayesian analyses.Key resultsThe analyses strongly support an Aster clade including the genera Sheareria, Rhynchospermum, Kalimeris (excluding Kalimeris longipetiolata), Heteropappus, Miyamayomena, Turczaninowia, Rhinactinidia, eastern Asian Doellingeria, Asterothamnus and Arctogeron. Many well-recognized species of Chinese Aster s.s. lie outside of the Aster clade.ConclusionsThe results reveal that EA Aster s.s. is both paraphyletic and polyphyletic. Sheareria, Rhynchospermum, Kalimeris (excluding K. longipetiolata), Heteropappus, Miyamayomena, Turczaninowia, Rhinactinidia, eastern Asian Doellingeria, Asterothamnus and Arctogeron should be included in Aster, whereas many species of Chinese Aster s.s. should be excluded. The recircumscribed Aster should be divided into two subgenera and nine sections. Kalimeris longipetiolata, Aster batangensis, A. ser. Albescentes, A. series Hersileoides, a two-species group composed of A. senecioides and A. fuscescens, and a six-species group including A. asteroides, should be elevated to generic level. With the Aster clade, they belong to the Australasian lineages. The generic status of Callistephus should be maintained. Whether Galatella (including Crinitina) and Tripolium should remain as genera or be merged into a single genus remains to be determined. In addition, the taxonomic status of A. auriculatus and the A. pycnophyllus-A. panduratus clade remains unresolved, and the systematic position of some segregates of EA Aster requires further study.
| S-EPMC3359916 | biostudies-literature
Project description:Stiletto-flies (Diptera: Therevidae) are highly diverse and species-rich in Australia and New Zealand, yet relatively few species have been recorded from neighbouring Papua New Guinea, Indonesia and throughout the remainder of Oceania. Indeed, in New Caledonia only a single species of the widely distributed Australasian genus Anabarhynchus Macquart (Therevinae) is previously known. Herein we describe two new agapophytine genera (i.e., Jeanchazeauia gen. nov., Calophytus gen. nov.), together comprising nine charismatic new species; this represents a first record of the subfamily from New Caledonia. The new genera and species are described and figured.
| S-EPMC7658186 | biostudies-literature
Project description:This study was the first report complete chloroplast genome of Aster batangensis (Astereae: Asteraceae), the perennial herb endemic to China. The plastid genome of Aster batangensis include 132 unique genes, with 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Among these genes, 21 duplicate genes, including10 protein-coding genes, 7 tRNA genes, and 4 rRNA genes were detected. The complete genome size of Aster batangensis has a typical quadripartite circular structure with 152,605 bp in total length, consisting a large single copy (LSC) of 84,351 bp and a small single copy (SSC) of 18,212 bp, separated by a pair of invested repeats (IR) of 25,021 bp. The average GC content of whole plastome sequence is 37.3%, and the LSC, SSC and IR regions is 35.3%, 31.3%, and 43.0%, respectively. The phylogenetic analysis by the maximum likelihood method showed that A. batangensis was closely related to the other members of Astereae (e.g. Aztecaster matudae, Conyza bonariensis, Lagenophora cuchumatanica, Baccharis tricuneata, Baccharis genistelloides).
| S-EPMC8526030 | biostudies-literature
Project description:An increasing number of isolations of Corynebacterium diphtheriae has been observed in recent years in the archipelago of New Caledonia. We aimed to analyze the clinical and microbiological features of samples with C. diphtheriae. All C. diphtheriae isolates identified in New Caledonia from May 2015 to May 2019 were included. For each case, a retrospective consultation of the patient files was conducted. Antimicrobial susceptibility phenotypes, tox gene and diphtheria toxin expression, biovar, and the genomic sequence were determined. Core genome multilocus sequence typing (cgMLST), 7-gene MLST, and search of genes of interest were performed from genomic assemblies. Fifty-eight isolates were included, with a median age of patients of 28 years (range: 9 days to 78 years). Cutaneous origin accounted for 51 of 58 (87.9%) isolates, and C. diphtheriae was associated with Staphylococcus aureus and/or Streptococcus pyogenes in three-quarters of cases. Half of cases came either from the main city Noumea (24%, 14/58) or from the sparsely populated island of Lifou (26%, 15/58). Six tox-positive isolates were identified, associated with recent travel to Vanuatu; 5 of these cases were linked and cgMLST confirmed recent transmission. Two cases of endocarditis in young female patients with a history of rheumatic fever involved tox-negative isolates. The 58 isolates were mostly susceptible to commonly used antibiotics. In particular, no isolate was resistant to the first-line molecules amoxicillin or erythromycin. Resistance to tetracycline was found in a genomic cluster of 17 (29%) isolates, 16 of which carried the tetO gene. There were 13 cgMLST sublineages, most of which were also observed in the neighboring country Australia. Cutaneous infections may harbor nontoxigenic C. diphtheriae isolates, which circulate largely silently in nonspecific wounds. The possible introduction of tox-positive strains from a neighboring island illustrates that diphtheria surveillance should be maintained in New Caledonia, and that immunization in neighboring islands must be improved. Genomic sequencing uncovers how genotypes circulate locally and across neighboring countries. IMPORTANCE The analysis of C. diphtheriae from the tropical archipelago of New Caledonia revealed a high genetic diversity with sublineages that may be linked to Polynesia, Australia, or metropolitan France. Genomic typing allowed confirming or excluding suspected transmission events among cases and contacts. A highly prevalent tetracycline-resistant sublineage harboring the tetO gene was uncovered. Toxigenic isolates were observed from patients returning from Vanuatu, showing the importance of improving vaccination coverage in settings where it is insufficient. This study also illustrates the importance for diphtheria surveillance of the inclusion of isolates from cutaneous sources in addition to respiratory cases, in order to provide a more complete epidemiological picture of the diversity and transmission of C. diphtheriae.
| S-EPMC10269643 | biostudies-literature
Project description:A new species of Stigmaphyllon (Malpighiaceae) is described: Stigmaphyllonpatricianum-firmenichianum Butaud. It is restricted to the coral islands of Ouvéa, Lifou and Maré in the Loyalty Islands Province (New Caledonia) and is most similar to Stigmaphyllondiscolor (Gand.) C.E.Anderson, known from New Caledonia and Solomon Islands. Previously, plants now known as Stigmaphyllonpatricianum-firmenichianum were included in Stigmaphyllontaomense (Baker f.) C.E.Anderson, endemic to the northern part of Grande-Terre and Belep Islands (New Caledonia). A new circumscription of Stigmaphyllontaomense is proposed. The regional key for New Caledonian species of Stigmaphyllon is updated.
| S-EPMC4547029 | biostudies-literature
Project description:Erigeron represents the third largest genus on the Juan Fernández Islands, with six endemic species, five of which occur exclusively on the younger Alejandro Selkirk Island with one species on both islands. While its continental sister species is unknown, Erigeron on the Juan Fernández Islands appears to be monophyletic and most likely evolved from South American progenitor species. We characterized the complete chloroplast genomes of five Erigeron species, including accessions of E. fernandezia and one each from Alejandro Selkirk and Robinson Crusoe Islands, with the purposes of elucidating molecular evolution and phylogenetic relationships. We found highly conserved chloroplast genomes in size, gene order and contents, and further identified several mutation hotspot regions. In addition, we found two positively selected chloroplast genes (ccsA and ndhF) among species in the islands. The complete plastome sequences confirmed the monophyly of Erigeron in the islands and corroborated previous phylogenetic relationships among species. New findings in the current study include (1) two major lineages, E. turricola-E. luteoviridis and E. fernandezia-E. ingae-E. rupicola, (2) the non-monophyly of E. fernandezia occurring on the two islands, and (3) the non-monophyly of the alpine species E. ingae complex.
| S-EPMC10935083 | biostudies-literature
Project description:The genus Rasilinus gen. n. is described (type species Rasilinus tchambicus sp. n.). Nine new species: Rasilinus bicolor sp. n., Rasilinus bifurcatus sp. n., Rasilinus bimaculatus sp. n., Rasilinus grandidens sp. n., Rasilinus longulus sp. n., Rasilinus subgemellus sp. n., Rasilinus subnodulus sp. n., Rasilinus tchambicus sp. n., Rasilinus virgatus sp. n. are described from New Caledonia. Illustrations of the external morphology, male and female terminalia, dorsal habitus colour photographs of the adults, key to species and distribution map of the new genus Rasilinus are provided.
| S-EPMC4740831 | biostudies-other