Variable selection for causal mediation analysis using LASSO-based methods.
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ABSTRACT:
SUBMITTER: Ye Z
PROVIDER: S-EPMC8189011 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:BackgroundAutomated feature selection methods such as the Least Absolute Shrinkage and Selection Operator (LASSO) have recently gained importance in the prediction of quality-related outcomes as well as the risk-adjustment of quality indicators in healthcare. The methods that have been used so far, however, do not account for the fact that patient data are typically nested within hospitals.MethodsTherefore, we aimed to demonstrate how to account for the multilevel structure of hospital data with LASSO and compare the results of this procedure with a LASSO variant that ignores the multilevel structure of the data. We used three different data sets (from acute myocardial infarcation, COPD, and stroke patients) with two dependent variables (one numeric and one binary), on which different LASSO variants with and without consideration of the nested data structure were applied. Using a 20-fold sub-sampling procedure, we tested the predictive performance of the different LASSO variants and examined differences in variable importance.ResultsFor the metric dependent variable Duration Stay, we found that inserting hospitals led to better predictions, whereas for the binary variable Mortality, all methods performed equally well. However, in some instances, the variable importances differed greatly between the methods.ConclusionWe showed that it is possible to take the multilevel structure of data into account in automated predictor selection and that this leads, at least partly, to better predictive performance. From the perspective of variable importance, including the multilevel structure is crucial to select predictors in an unbiased way under consideration of the structural differences between hospitals.
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Project description:While causal mediation analysis has seen considerable recent development for a single measured mediator (M) and final outcome (Y), less attention has been given to repeatedly measured M and Y. Previous methods have typically involved discrete-time models that limit inference to the particular measurement times used and do not recognize the continuous nature of the mediation process over time. To overcome such limitations, we present a new continuous-time approach to causal mediation analysis that uses a differential equations model in a potential outcomes framework to describe the causal relationships among model variables over time. A connection between the differential equation models and standard repeated measures models is made to provide convenient model formulation and fitting. A continuous-time extension of the sequential ignorability assumption allows for identifiable natural direct and indirect effects as functions of time, with estimation based on a two-step approach to model fitting in conjunction with a continuous-time mediation formula. Novel features include a measure of an overall mediation effect based on the "area between the curves," and an approach for predicting the effects of new interventions. Simulation studies show good properties of estimators and the new methodology is applied to data from a cohort study to investigate sugary drink consumption as a mediator of the effect of socioeconomic status on dental caries in children.
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Project description:ObjectiveWe provide an overview of regression-based causal mediation analysis in the field of traumatic stress and guidance on how to conduct mediation analysis using our R package regmedint.MethodWe discuss the causal interpretations of the quantities that causal mediation analysis estimates, including total, direct, and indirect effects, especially when the interaction between exposure and mediator is permitted. We discuss the assumptions that must be fulfilled for mediation analyses to validly estimate these causal quantities, discuss suitable study designs for assessing mediation, and describe how causal mediation analysis differs from traditional methods of mediation. To illustrate how to conduct and interpret mediation analysis using our R package regmedint, we use data from a published longitudinal study to assess the extent to which children's externalizing behavior mediates changes in parental negative feelings during the COVID-19 lockdown. We compare the results to those obtained using traditional methods, thus illustrating the importance of accounting for exposure-mediator interaction when an interaction may be present.ResultsWhen the exposure and the mediator interact, traditional methods can provide estimates of direct and indirect effects that differ from those provided by more flexible causal mediation methods. When the exposure and the mediator do not interact, traditional methods and causal mediation method may estimate similar direct and indirect effects depending on the model specification.ConclusionsIn contrast to traditional methods of mediation analysis, regression-based causal mediation methods seek to estimate specific interventional quantities, not mere associations, and the causal methods explicitly allow for exposure-mediator interactions. We recommend using these methods by default rather than using more restrictive traditional methods. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
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