Dataset Information

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform.

ABSTRACT: The recent and growing focus on reproducibility in neuroimaging studies has led many major academic centers to use cloud-based imaging databases for storing, analyzing, and sharing complex imaging data. Flywheel is one such database platform that offers easily accessible, large-scale data management, along with a framework for reproducible analyses through containerized pipelines. The Brain Imaging Data Structure (BIDS) is the de facto standard for neuroimaging data, but curating neuroimaging data into BIDS can be a challenging and time-consuming task. In particular, standard solutions for BIDS curation are limited on Flywheel. To address these challenges, we developed "FlywheelTools," a software toolbox for reproducible data curation and manipulation on Flywheel. FlywheelTools includes two elements: fw-heudiconv, for heuristic-driven curation of data into BIDS, and flaudit, which audits and inventories projects on Flywheel. Together, these tools accelerate reproducible neuroscience research on the widely used Flywheel platform.

SUBMITTER: Tapera TM

PROVIDER: S-EPMC8258420 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

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Publications

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform.

Tapera Tinashe M TM Cieslak Matthew M Bertolero Max M Adebimpe Azeez A Aguirre Geoffrey K GK Butler Ellyn R ER Cook Philip A PA Davila Diego D Elliott Mark A MA Linguiti Sophia S Murtha Kristin K Tackett William W Detre John A JA Satterthwaite Theodore D TD

Frontiers in neuroinformatics 20210622

The recent and growing focus on reproducibility in neuroimaging studies has led many major academic centers to use cloud-based imaging databases for storing, analyzing, and sharing complex imaging data. Flywheel is one such database platform that offers easily accessible, large-scale data management, along with a framework for reproducible analyses through containerized pipelines. The Brain Imaging Data Structure (BIDS) is the <i>de facto</i> standard for neuroimaging data, but curating neuroima ...[more]

PMID: 34239433

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Dataset Information

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform.

Publications

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform.

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