A generalizable and accessible approach to machine learning with global satellite imagery.
Ontology highlight
ABSTRACT:
SUBMITTER: Rolf E
PROVIDER: S-EPMC8292408 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Recognizing the importance of road infrastructure to promote human health and economic development, actors around the globe are regularly investing in both new roads and road improvements. However, in many contexts there is a sparsity-or complete lack-of accurate information regarding existing road infrastructure, challenging the effective identification of where investments should be made. Previous literature has focused on overcoming this gap through the use of satellite imagery to detect and map roads. In this piece, we extend this literature by leveraging satellite imagery to estimate road quality and concomitant information about travel speed. We adopt a transfer learning approach in which a convolutional neural network architecture is first trained on data collected in the United States (where data is readily available), and then "fine-tuned" on an independent, smaller dataset collected from Nigeria. We test and compare eight different convolutional neural network architectures using a dataset of 53,686 images of 2,400 kilometers of roads in the United States, in which each road segment is measured as "low", "middle", or "high" quality using an open, cellphone-based measuring platform. Using satellite imagery to estimate these classes, we achieve an accuracy of 80.0%, with 99.4% of predictions falling within the actual or an adjacent class. The highest performing base model was applied to a preliminary case study in Nigeria, using a dataset of 1,000 images of paved and unpaved roads. By tailoring our US-model on the basis of this Nigeria-specific data, we were able to achieve an accuracy of 94.0% in predicting the quality of Nigerian roads. A continuous case estimate also showed the ability, on average, to predict road quality to within 0.32 on a 0 to 3 scale (with higher values indicating higher levels of quality).
| S-EPMC8270213 | biostudies-literature
Project description:This study aims to develop a software framework for predicting aridity using vegetation indices (VI) from LANDSAT 8 OLI images. VI data are predicted using machine learning (ml): Random Forest (RF) and Correlation and Regression Trees (CART). Comparison of prediction using Artificial Neural Network (ANN), Support Vector Machine (SVM), k-nearest neighbors (k-nn) and Multivariate Adaptive Regression Spline (MARS). Prediction results are interpolated using Inverse Distance Weight (IDW). This study was conducted in stages: (1) Image preprocessing; (2) calculating numerical data extracted from the LANDSAT band imagery using vegetation indices; (3) analyzing correlation coefficients between VI; (4) prediction using RF and CART; (5) comparing performances between RF and CART using ANN, SVM, k-nn, and MARS; (6) testing the accuracy of prediction using Mean Square Error (MSE) and Mean Absolute Percentage Error (MAPE); (7) interpolating with IDW. Correlation coefficient of VI data shows a positive correlation, the lowest r (0.07) and the highest r (0.98). The experiments show that the RF and CART algorithms have efficiency and effectivity in determining the aridity areas better than the ANN, SVM, k-nn, and MARS algorithm. RF has a difference between the predicted results and 1.04% survey data MAPE and the smallest value close to zero is 0.05 MSE. CART has a difference between the predicted results and 1.05% survey data MAPE and the smallest value approaching to zero which is 0.05 MSE. The prediction results of VI show that in 2020 most of the study areas were low vegetation areas with the Normalized Difference Vegetation Index (NDVI) < 0.21, had an indication of drought with the Vegetation Health Index (VHI) < 31.10, had a Vegetation Condition Index (VCI) in some areas between 35%-50% (moderate drought) and < 35% (high drought). The Burn Area Index (dBAI) values are between -3, 971 and -2,376 that show the areas have a low fire risk, and index values are between -0, 208 and -0,412 that show the areas are starting vegetation growth. The result of this study shows that the machine learning algorithms is an accurate and stable algorithm in predicting the risks of drought and land fire based on the VI data extracted from the LANDSAT 8 OLL imagery. The VI data contain the record of vegetation condition and its environment, including humidity, temperatures, and the environmental vegetation health.
| S-EPMC8157165 | biostudies-literature
Project description:IntroductionThis article proposes a novel method for matching places based on visual similarity, using high-resolution satellite imagery and machine learning. This approach strengthens comparisons when the built environment is a potential confounder, as in many injury research studies.MethodsAs an example, I apply this method to study the spatial influence of alcohol outlets (AOs) on firearm violence in Philadelphia, Pennsylvania, specifically beer stores and bar/restaurants. Using a case-control framework, city blocks with shootings in 2017-2018 were matched with similar-looking blocks with no shootings, based on analysis with a pretrained convolutional neural network and t-distributed stochastic neighbour embedding. Logistic regression was used to estimate the OR of a shooting on the same block as an AO and within one-block and two-block distances, conditional on additional factors such as land use, demographic composition and illegal drug activity.ResultsThe case-control matches were similar in visual appearance, on human inspection, and were well balanced on covariate measures. The fully adjusted model estimated an increased shootings risk for locations with beer stores within one block, OR=1.5, 95% CI 1.1 to 2.1, p=0.02, and locations with bar/restaurants on the same block, OR=1.6, 95% CI 1.1 to 2.4, p=0.02.ConclusionThese findings align with previous study findings while addressing the concern that AOs might systematically be located in certain kinds of environments, providing stronger evidence of a causal effect on nearby firearm violence. Matching on visual similarity can improve observational injury studies involving place-based risks.
| S-EPMC8268046 | biostudies-literature
Project description:The worldwide growth of cancer incidence can be explained in part by changes in the prevalence and distribution of risk factors. There are geographical gaps in the estimates of cancer prevalence, which could be filled with innovative methods. We used deep learning (DL) features extracted from satellite images to predict cancer prevalence at the census tract level in seven cities in the United States. We trained the model using detailed cancer prevalence estimates from 2018 available in the CDC (Center for Disease Control) 500 Cities project. Data from 3500 census tracts covering 14,483,366 inhabitants were included. Features were extracted from 170,210 satellite images with deep learning. This method explained up to 64.37% (median = 43.53%) of the variation of cancer prevalence. Satellite features are highly correlated with individual socioeconomic and health measures that are linked to cancer prevalence (age, smoking and drinking status, and obesity). A higher similarity between two environments is associated with better generalization of the model (p = 1.10-6). This method can be used to accurately estimate cancer prevalence at a high spatial resolution without using surveys at a fraction of the cost.
| S-EPMC7766226 | biostudies-literature
Project description:A key challenge for volcanological science and hazard management is that few of the world's volcanoes are effectively monitored. Satellite imagery covers volcanoes globally throughout their eruptive cycles, independent of ground-based monitoring, providing a multidecadal archive suitable for probabilistic analysis linking deformation with eruption. Here we show that, of the 198 volcanoes systematically observed for the past 18 years, 54 deformed, of which 25 also erupted. For assessing eruption potential, this high proportion of deforming volcanoes that also erupted (46%), together with the proportion of non-deforming volcanoes that did not erupt (94%), jointly represent indicators with 'strong' evidential worth. Using a larger catalogue of 540 volcanoes observed for 3 years, we demonstrate how this eruption-deformation relationship is influenced by tectonic, petrological and volcanic factors. Satellite technology is rapidly evolving and routine monitoring of the deformation status of all volcanoes from space is anticipated, meaning probabilistic approaches will increasingly inform hazard decisions and strategic development.
| S-EPMC4409635 | biostudies-literature
Project description:Most cetacean species are wide-ranging and highly mobile, creating significant challenges for researchers by limiting the scope of data that can be collected and leaving large areas un-surveyed. Aerial surveys have proven an effective way to locate and study cetacean movements but are costly and limited in spatial extent. Here we present a semi-automated pipeline for whale detection from very high-resolution (sub-meter) satellite imagery that makes use of a convolutional neural network (CNN). We trained ResNet, and DenseNet CNNs using down-scaled aerial imagery and tested each model on 31 cm-resolution imagery obtained from the WorldView-3 sensor. Satellite imagery was tiled and the trained algorithms were used to classify whether or not a tile was likely to contain a whale. Our best model correctly classified 100% of tiles with whales, and 94% of tiles containing only water. All model architectures performed well, with learning rate controlling performance more than architecture. While the resolution of commercially-available satellite imagery continues to make whale identification a challenging problem, our approach provides the means to efficiently eliminate areas without whales and, in doing so, greatly accelerates ocean surveys for large cetaceans.
| S-EPMC6772036 | biostudies-literature
Project description:BackgroundWildland fire (wildfire; bushfire) pollution contributes to poor air quality, a risk factor for premature death. The frequency and intensity of wildfires are expected to increase; improved tools for estimating exposure to fire smoke are vital. New-generation satellite-based sensors produce high-resolution spectral images, providing real-time information of surface features during wildfire episodes. Because of the vast size of such data, new automated methods for processing information are required.ObjectiveWe present a deep fully convolutional neural network (FCN) for predicting fire smoke in satellite imagery in near-real time (NRT).MethodsThe FCN identifies fire smoke using output from operational smoke identification methods as training data, leveraging validated smoke products in a framework that can be operationalized in NRT. We demonstrate this for a fire episode in Australia; the algorithm is applicable to any geographic region.ResultsThe algorithm has high classification accuracy (99.5% of pixels correctly classified on average) and precision (average intersection over union = 57.6%).SignificanceThe FCN algorithm has high potential as an exposure-assessment tool, capable of providing critical information to fire managers, health and environmental agencies, and the general public to prevent the health risks associated with exposure to hazardous smoke from wildland fires in NRT.
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Project description:Recent years have seen a dramatic increase in the application of organoids to developmental biology, biomedical and translational studies. Organoids are large structures with high phenotypic complexity and are imaged on a wide range of platforms, from simple benchtop stereoscopes to high-content confocal-based imaging systems. The large volumes of images, resulting from hundreds of organoids cultured at once, are becoming increasingly difficult to inspect and interpret. Hence, there is a pressing demand for a coding-free, intuitive and scalable solution that analyses such image data in an automated yet rapid manner. Here, we present MOrgAna, a Python-based software that implements machine learning to segment images, quantify and visualize morphological and fluorescence information of organoids across hundreds of images, each with one object, within minutes. Although the MOrgAna interface is developed for users with little to no programming experience, its modular structure makes it a customizable package for advanced users. We showcase the versatility of MOrgAna on several in vitro systems, each imaged with a different microscope, thus demonstrating the wide applicability of the software to diverse organoid types and biomedical studies.
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Project description:This work describes a generalized method for classifying motor-related neural signals for a brain-computer interface (BCI), based on a stochastic machine learning method. The method differs from the various feature extraction and selection techniques employed in many other BCI systems. The classifier does not use extensive a-priori information, resulting in reduced reliance on highly specific domain knowledge. Instead of pre-defining features, the time-domain signal is input to a population of multi-layer perceptrons (MLPs) in order to perform a stochastic search for the best structure. The results showed that the average performance of the new algorithm outperformed other published methods using the Berlin BCI IV (2008) competition dataset and was comparable to the best results in the Berlin BCI II (2002-3) competition dataset. The new method was also applied to electroencephalography (EEG) data recorded from five subjects undertaking a hand squeeze task and demonstrated high levels of accuracy with a mean classification accuracy of 78.9% after five-fold cross-validation. Our new approach has been shown to give accurate results across different motor tasks and signal types as well as between subjects.
| S-EPMC4482677 | biostudies-literature
Project description:Hyperspectral image (HSI) consists of hundreds of narrow spectral band components with rich spectral and spatial information. Extreme Learning Machine (ELM) has been widely used for HSI analysis. However, the classical ELM is difficult to use for sparse feature leaning due to its randomly generated hidden layer. In this paper, we propose a novel unsupervised sparse feature learning approach, called Evolutionary Multiobjective-based ELM (EMO-ELM), and apply it to HSI feature extraction. Specifically, we represent the task of constructing the ELM Autoencoder (ELM-AE) as a multiobjective optimization problem that takes the sparsity of hidden layer outputs and the reconstruction error as two conflicting objectives. Then, we adopt an Evolutionary Multiobjective Optimization (EMO) method to solve the two objectives, simultaneously. To find the best solution from the Pareto solution set and construct the best trade-off feature extractor, a curvature-based method is proposed to focus on the knee area of the Pareto solutions. Benefited from the EMO, the proposed EMO-ELM is less prone to fall into a local minimum and has fewer trainable parameters than gradient-based AEs. Experiments on two real HSIs demonstrate that the features learned by EMO-ELM not only preserve better sparsity but also achieve superior separability than many existing feature learning methods.
| S-EPMC7085560 | biostudies-literature