Modeling Connectivity of Non-floodplain Wetlands: Insights, Approaches, and Recommendations.
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ABSTRACT:
SUBMITTER: Jones CN
PROVIDER: S-EPMC8312621 | biostudies-literature |
REPOSITORIES: biostudies-literature
Similar Datasets
Project description:Non-floodplain wetlands - those located outside the floodplains - have emerged as integral components to watershed resilience, contributing hydrologic and biogeochemical functions affecting watershed-scale flooding extent, drought magnitude, and water-quality maintenance. However, the absence of a global dataset of non-floodplain wetlands limits their necessary incorporation into water quality and quantity management decisions and affects wetland-focused wildlife habitat conservation outcomes. We addressed this critical need by developing a publicly available "Global NFW" (Non-Floodplain Wetland) dataset, comprised of a global river-floodplain map at 90 m resolution coupled with a global ensemble wetland map incorporating multiple wetland-focused data layers. The floodplain, wetland, and non-floodplain wetland spatial data developed here were successfully validated within 21 large and heterogenous basins across the conterminous United States. We identified nearly 33 million potential non-floodplain wetlands with an estimated global extent of over 16×106 km2. Non-floodplain wetland pixels comprised 53% of globally identified wetland pixels, meaning the majority of the globe's wetlands likely occur external to river floodplains and coastal habitats. The identified global NFWs were typically small (median 0.039 km2), with a global median size ranging from 0.018-0.138 km2. This novel geospatial Global NFW static dataset advances wetland conservation and resource-management goals while providing a foundation for global non-floodplain wetland functional assessments, facilitating non-floodplain wetland inclusion in hydrological, biogeochemical, and biological model development. The data are freely available through the United States Environmental Protection Agency's Environmental Dataset Gateway (https://gaftp.epa.gov/EPADataCommons/ORD/Global_NonFloodplain_Wetlands/, last access: 24 May 2023) and through https://doi.org/10.23719/1528331 (Lane et al., 2023a).
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Project description:Species diversity is affected by processes operating at multiple spatial scales, although the most relevant scales that contribute to compositional variation and the temporal shifts of the involved mechanisms remain poorly explored. We studied spatial patterns of phytoplankton, rotifers and microcrustacean diversity across scales in a river floodplain system of the Danube in Austria under contrasting hydrological conditions (post-flood versus low water level).The species turnover between water sections (β2) and between wetlands (β3) was the major components of regional diversity for all studied groups, with species turnover between habitats (β1) as a minor contributor. β1 diversity and β2 diversity were lower than expected by chance in most cases, suggesting that communities are more homogeneous than expected at these scales. β3 diversity was higher than expected by chance in many cases, indicating more distinct communities at the wetland level. Patterns were highly similar under different hydrological conditions, indicating no major immediate effect of flood events.Local environmental and spatial factors were similarly important in structuring phytoplankton, rotifer and microcrustacean communities in both hydrological conditions. Relevant environmental factors were spatially structured in post-flood conditions especially between sections, suggesting flood-driven homogenisation within the wetlands. Under low water level, spatial structuring of environment decreased and pure environmental factors gained relevance for phytoplankton and rotifers.Our results suggest that although β2 diversity between water sections is a major component of regional diversity, long-term spatial processes responding to connectivity across the wetland structure phytoplankton, rotifer and microcrustacean communities. Aquatic sections within the limited spatial extent of the remaining floodplain areas appear more homogeneous than expected probably due to flood recurrence over the years.These results highlight that adequate planning of restoration and conservation strategies of floodplain wetlands should consider environmental heterogeneity together with long-term spatial processes.
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Project description:The hydrologic connectivity of non-floodplain wetlands (NFWs) with downstream water (DW) has gained increased importance, but connectivity via groundwater (GW) is largely unknown owing to the high complexity of hydrological processes and climatic seasonality. In this study, a causal inference method, convergent cross mapping (CCM), was applied to detect the hydrologic causality between upland NFW and DW through GW. CCM is a nonlinear inference method for detecting causal relationships among environmental variables with weak or moderate coupling in nonlinear dynamical systems. We assumed that causation would exist when the following conditions were observed: (1) the presence of two direct causal (NFW → GW and GW → DW) and one indirect causal (NFW → DW) relationship; (2) a nonexistent opposite causal relationship (DW → NFW); (3) the two direct causations with shorter lag times relative to indirect causation; and (4) similar patterns not observed with pseudo DW. The water levels monitored by a well and piezometer represented NFW and GW measurements, respectively, and the DW was indicated by the baseflow at the outlet of the drainage area, including NFW. To elucidate causality, the DW taken at the adjacent drainage area with similar climatic seasonality was also tested as pseudo DW. The CCM results showed that the water flow from NFW to GW and then DW was only present, and any opposite flows did not exist. In addition, direct causations had shorter lag time than indirect causation, and 3-day lag time was shown between NFW and DW. Interestingly, the results with pseudo DW did not show any lagged interactions, indicating non-causation. These results provide the signals for the hydrologic connectivity of NFW and DW with GW. Therefore, this study would support the importance of NFW protection and management.
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Project description:Floodplains play essential roles in the ecological functions of regional environments. The merging and coalescence of bacterial communities in aquatic environments results in periodic patterns driven by regular hydrological activities, which may, in turn, influence ecological activities. However, the degree of bacterial community coalescence in the lateral and vertical directions as well as the underlying hydrological mechanism of floodplain ecosystems is poorly understood. Therefore, we investigated the spatiotemporal patterns and coalescence processes of planktonic and sedimentary bacterial communities during normal and high-water periods in a floodplain ecosystem of the Yellow River source region. We classified bacterial operational taxonomic units (OTUs) based on 16S rRNA gene sequencing, and quantified community coalescence by calculating the proportions of overlapping OTUs, the contributions of upstream sources to downstream sinks, and positive/negative cohesion. The results revealed major differences in the composition and diversity of planktonic and sedimentary bacterial communities. Bacterial community diversity in the high-water period was higher than in the normal period. Laterally, hydrological connectivity promoted the immigration and coalescence of bacterial communities to oxbow lakes in both the mainstream and tributaries, with the coalescence degree of planktonic bacteria (2.9%) higher than that of sedimentary bacteria (1.7%). Vertically, the coalescence degree of mainstream planktonic and sedimentary bacterial communities was highest, reaching 2.9%. Co-occurrence network analysis revealed that hydrological connectivity increased the complexity of the bacterial network and enhanced the coalescence of keystone species to oxbow lakes. Furthermore, community coalescence improved the competitiveness and dispersal of bacterial communities. This study demonstrated that coalescence of bacterial communities is driven by hydrological connectivity in a floodplain ecosystem. Further studies should investigate the processes of bacterial community coalescence in floodplains in more detail, which could provide new approaches for environmental protection and ecological function preservation.
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Project description:In vitro modeling of human disease has recently become feasible with the adoption of induced pluripotent stem cell (iPSC) technology. Here, we established patient-derived iPSCs from an Li-Fraumeni Syndrome (LFS) family and investigated the role of mutant p53 in the development of osteosarcoma (OS). Several members of this family carried a heterozygous p53(G245D) mutation and presented with a broad spectrum of tumors including OS. Osteoblasts (OBs) differentiated from iPSC-derived mesenchymal stem cells (MSCs) recapitulated OS features including defective osteoblastic differentiation (OB differentiation) as well as tumorigenic ability. Systematic analyses revealed that the expression of genes enriched in LFS-derived OBs strongly correlated with decreased time to tumor recurrence and poor patient survival. In silico cytogenetic region enrichment analysis (CREA) demonstrated that LFS-derived OBs do not have genomic rearrangements and hence are a particularly valuable tool for elucidating early oncogenic events prior to the accumulation of secondary alterations. LFS OBs exhibited impaired upregulation of the imprinted gene H19 during osteogenesis. Restoration of H19 expression in LFS OBs facilitated osteogenic differentiation and repressed tumorigenic potential. By integrating human imprinted gene network (IGN) and functional genomic analyses, we found that H19-mediates suppression of LFS-associated OS through the IGN component DECORIN (DCN). Downregulation of DCN impairs H19-mediated osteogenic differentiation and tumor suppression. In summary, these findings demonstrate the feasibility of studying inherited human cancer syndromes with iPSCs and also provide molecular insights into the role of the IGN in p53 mutation-mediated tumorigenesis. mRNAseq profiling during mesenchymal stem cell differentiation to osteoblasts.
2015-04-10 | E-GEOD-58123 | biostudies-arrayexpress
Project description:Floodplain wetland ecosystems respond dynamically to flooding, fire and geomorphological processes. We employed a combined geomorphological and environmental proxy approach to assess allochthonous and autochthonous macro-charcoal accumulation in the Macquarie Marshes, Australia, with implications for the reconstruction of fire regimes and environmental conditions in large, open-system wetlands. After accounting for fluvial macro-charcoal flux (1.05 ± 0.32 no. cm-2 a-1), autochthonous macro-charcoal in ~1 m deep sediment profiles spanning ~1.7 ka were highly variable and inconsistent between cores and wetlands (concentrations from 0 to 438 no. cm-3, mean accumulation rates from 0 to 3.86 no. cm-2 a-1). A positive correlation existed between the number of recent fires, satellite-observed ignition points, and macro-charcoal concentrations at the surface of the wetlands. Sedimentology, geochemistry, and carbon stable isotopes (δ13C range -15 to -25 ‰) were similar in all cores from both wetlands and varied little with depth. Application of macro-charcoal and other environmental proxy techniques is inherently difficult in large, dynamic wetland systems due to variations in charcoal sources, sediment and charcoal deposition rates, and taphonomic processes. Major problems facing fire history reconstruction using macro-charcoal records in these wetlands include: (1) spatial and temporal variations in fire activity and ash and charcoal products within the wetlands, (2) variations in allochthonous inputs of charcoal from upstream sources, (3) tendency for geomorphic dynamism to affect flow dispersal and sediment and charcoal accumulation, and (4) propensity for post-depositional modification and/or destruction of macro-charcoal by flooding and taphonomic processes. Recognition of complex fire-climate-hydrology-vegetation interactions is essential. High-resolution, multifaceted approaches with reliable geochronologies are required to assess spatial and temporal patterns of fire and to reconstruct in order to interpret wetland fire regimes.
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Project description:We evaluated the current literature, coupled with our collective research expertise, on surface-water connectivity of wetlands considered to be "geographically isolated" (sensu Tiner Wetlands 23:494-516, 2003a) to critically assess the scientific foundation of grouping wetlands based on the singular condition of being surrounded by uplands. The most recent research on wetlands considered to be "geographically isolated" shows the difficulties in grouping an ecological resource that does not reliably indicate lack of surface water connectivity in order to meet legal, regulatory, or scientific needs. Additionally, the practice of identifying "geographically isolated wetlands" based on distance from a stream can result in gross overestimates of the number of wetlands lacking ecologically important surface-water connections. Our findings do not support use of the overly simplistic label of "geographically isolated wetlands". Wetlands surrounded by uplands vary in function and surface-water connections based on wetland landscape setting, context, climate, and geographic region and should be evaluated as such. We found that the "geographically isolated" grouping does not reflect our understanding of the hydrologic variability of these wetlands and hence does not benefit conservation of the Nation's diverse wetland resources. Therefore, we strongly discourage use of categorizations that provide overly simplistic views of surface-water connectivity of wetlands fully embedded in upland landscapes.
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Project description:Research into processes governing the hydrologic connectivity of depressional wetlands has advanced rapidly in recent years. Nevertheless, a need persists for broadly applicable, non-site-specific guidance to facilitate further research. Here, we explicitly use the hydrologic landscapes theoretical framework to develop broadly applicable conceptual knowledge of depressional-wetland hydrologic connectivity. We used a numerical model to simulate the groundwater flow through five generic hydrologic landscapes. Next, we inserted depressional wetlands into the generic landscapes and repeated the modeling exercise. The results strongly characterize groundwater connectivity from uplands to lowlands as being predominantly indirect. Groundwater flowed from uplands and most of it was discharged to the surface at a concave-upward break in slope, possibly continuing as surface water to lowlands. Additionally, we found that groundwater connectivity of the depressional wetlands was primarily determined by the slope of the adjacent water table. However, we identified certain arrangements of landforms that caused the water table to fall sharply and not follow the surface contour. Finally, we synthesize our findings and provide guidance to practitioners and resource managers regarding the management significance of indirect groundwater discharge and the effect of depressional wetland groundwater connectivity on pond permanence and connectivity.
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Project description:Wetland hydrologic connections to downstream waters influence stream water quality. However, no systematic approach for characterizing this connectivity exists. Here using physical principles, we categorized conterminous US freshwater wetlands into four hydrologic connectivity classes based on stream contact and flowpath depth to the nearest stream: riparian, non-riparian shallow, non-riparian mid-depth and non-riparian deep. These classes were heterogeneously distributed over the conterminous United States; for example, riparian dominated the south-eastern and Gulf coasts, while non-riparian deep dominated the Upper Midwest and High Plains. Analysis of a national stream dataset indicated acidification and organic matter brownification increased with connectivity. Eutrophication and sedimentation decreased with wetland area but did not respond to connectivity. This classification advances our mechanistic understanding of wetland influences on water quality nationally and could be applied globally.
| S-EPMC10302404 | biostudies-literature
Project description:In vitro modeling of human disease has recently become feasible with the adoption of induced pluripotent stem cell (iPSC) technology. Here, we established patient-derived iPSCs from an Li-Fraumeni Syndrome (LFS) family and investigated the role of mutant p53 in the development of osteosarcoma (OS). Several members of this family carried a heterozygous p53(G245D) mutation and presented with a broad spectrum of tumors including OS. Osteoblasts (OBs) differentiated from iPSC-derived mesenchymal stem cells (MSCs) recapitulated OS features including defective osteoblastic differentiation (OB differentiation) as well as tumorigenic ability. Systematic analyses revealed that the expression of genes enriched in LFS-derived OBs strongly correlated with decreased time to tumor recurrence and poor patient survival. In silico cytogenetic region enrichment analysis (CREA) demonstrated that LFS-derived OBs do not have genomic rearrangements and hence are a particularly valuable tool for elucidating early oncogenic events prior to the accumulation of secondary alterations. LFS OBs exhibited impaired upregulation of the imprinted gene H19 during osteogenesis. Restoration of H19 expression in LFS OBs facilitated osteogenic differentiation and repressed tumorigenic potential. By integrating human imprinted gene network (IGN) and functional genomic analyses, we found that H19-mediates suppression of LFS-associated OS through the IGN component DECORIN (DCN). Downregulation of DCN impairs H19-mediated osteogenic differentiation and tumor suppression. In summary, these findings demonstrate the feasibility of studying inherited human cancer syndromes with iPSCs and also provide molecular insights into the role of the IGN in p53 mutation-mediated tumorigenesis.
2015-04-10 | GSE58123 | GEO