A century-long record of plant evolution reconstructed from a coastal marsh seed bank.
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ABSTRACT:
SUBMITTER: Blum MJ
PROVIDER: S-EPMC8327947 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Background and aimsThe capacity for dispersal to promote or hinder species' responses to global change remains a major question in ecology. One ecosystem experiencing rapid change is the tidal marsh, which is migrating inland in response to accelerated sea level rise. Few studies to date have investigated the ecological dynamics that impact this large-scale migration. Seed dispersal and persistence in the soil seed bank is a component that can be strongly indicative of community trajectories. With this in mind, the aim of our study was to characterize the germinable seed bank across a marsh-forest ecotone in the Chesapeake Bay.MethodsSoil samples were collected across transects that ran from the high marsh to the coastal loblolly pine forest in a brackish marsh in Blackwater National Wildlife Refuge, MD, USA. Samples were grown in a greenhouse and watered with either freshwater or 3 ppt seawater solution. We compared community composition across transects and between salinity treatments. Additionally, we compared the seed bank with standing vegetation and used seed trait data from the TRY Database to investigate changes in functional traits along this ecotone.Key resultsWe found halophytic species dispersing up to 15 m into the forest and a general lack of obligate upland species, including near absence of Pinus taeda, the dominant species in the forest canopy. A majority of species detected in the seed bank were wetland species of various types, with species with wide salinity tolerance arising most frequently. Salinity addition had a significant negative influence on seed bank diversity.ConclusionOverall, our seed bank results suggest that dispersal and germination under the conditions of saltwater intrusion will limit forest regeneration and favour marsh plant dispersal. This indicates that the ecological processes that determine the soil seed bank community will support continued migration of marsh species into uplands.
| S-EPMC7442344 | biostudies-literature
Project description:Stratigraphic accretion of dormant propagules in soil can result in natural archives useful for studying ecological and evolutionary responses to environmental change. Few attempts have been made, however, to use soil-stored seed banks as natural archives, in part because of concerns over nonrandom attrition and mixed stratification. Here, we examine the persistent seed bank of Schoenoplectus americanus, a foundational brackish marsh sedge, to determine whether it can serve as a resource for reconstructing historical records of demographic and population genetic variation. After assembling profiles of the seed bank from radionuclide-dated soil cores, we germinated seeds to "resurrect" cohorts spanning the 20th century. Using microsatellite markers, we assessed genetic diversity and differentiation among depth cohorts, drawing comparisons to extant plants at the study site and in nearby and more distant marshes. We found that seed density peaked at intermediate soil depths. We also detected genotypic differences among cohorts as well as between cohorts and extant plants. Genetic diversity did not decline with depth, indicating that the observed pattern of differentiation is not due to attrition. Patterns of differentiation within and among extant marshes also suggest that local populations persist as aggregates of small clones, likely reflecting repeated seedling recruitment and low immigration from admixed regional gene pools. These findings indicate that persistent and stratified soil-stored seed banks merit further consideration as resources for reconstructing decadal- to century-long records that can lend insight into the tempo and nature of ecological and evolutionary processes that shape populations over time.
| S-EPMC6183470 | biostudies-literature
Project description:Dispersal is an important factor in plant community assembly, but assembly studies seldom include information on actual dispersal into communities, i.e. the local propagule pool. The aim of this study was to determine which factors influence plant community assembly by focusing on two phases of the assembly process: the dispersal phase and the establishment phase. At 12 study sites in grazed ex-arable fields in Sweden the local plant community was determined and in a 100-m radius around the centre of each site, the regional species pool was measured. The local seed bank and the seed rain was explored to estimate the local propagule pool. Trait-based models were then applied to investigate if species traits (height, seed mass, clonal abilities, specific leaf area and dispersal method) and regional abundance influenced which species from the regional species pool, dispersed to the local community (dispersal phase) and which established (establishment phase). Filtering of species during the dispersal phase indicates the effect of seed limitation while filtering during the establishment phase indicates microsite limitation. On average 36% of the regional species pool dispersed to the local sites and of those 78% did establish. Species with enhanced dispersal abilities, e.g. higher regional abundance, smaller seeds and dispersed by cattle, were more likely to disperse to the sites than other species. At half the sites, dispersal was influenced by species height. Species establishment was however mainly unlinked to the traits included in this study. This study underlines the importance of seed limitation in local plant community assembly. It also suggests that without information on species dispersal into a site, it is difficult to distinguish between the influence of dispersal and establishment abilities, and thus seed and microsite limitation, as both can be linked to the same trait.
| S-EPMC4109992 | biostudies-literature
Project description:Dormancy is a bet-hedging strategy that allows organisms to persist through conditions that are suboptimal for growth and reproduction by entering a reversible state of reduced metabolic activity. Dormancy allows a population to maintain a reservoir of genetic and phenotypic diversity (i.e., a seed bank) that can contribute to the long-term survival of a population. This strategy can be potentially adaptive and has long been of interest to ecologists and evolutionary biologists. However, comparatively little is known about how dormancy influences the fundamental evolutionary forces of genetic drift, mutation, selection, recombination, and gene flow. Here, we investigate how seed banks affect the processes underpinning evolution by reviewing existing theory, implementing novel simulations, and determining how and when dormancy can influence evolution as a population genetic process. We extend our analysis to examine how seed banks can alter macroevolutionary processes, including rates of speciation and extinction. Through the lens of population genetic theory, we can understand the extent that seed banks influence the evolutionary dynamics of microorganisms as well as other taxa.
| S-EPMC5748526 | biostudies-literature
Project description:Marsh edge retreat by wave erosion, an ubiquitous process along estuaries, could affect vegetation dynamics in ways that differ from well-established elevation-driven interactions. Along the marshes of Delaware Bay (USA) we show that species composition from marsh edge to interior is driven by gradients in wave stress, bed elevation, and sediment deposition. At the marsh edge, large wave stress allows only short-statured species. Approximately 17m landward, decreasing wave stress and increasing deposition cause the formation of a ridge. There, high marsh fugitive and shrub species prevails. Both the marsh edge and the ridge retreat synchronously by several meters per year causing wave energy and deposition to change rapidly. Yet, the whole ecogeomorphologic profile translates landward in a dynamic equilibrium, where the low marsh replaces the high marsh ridge community and the high marsh ridge community replaces the mid-marsh grasses on the marsh plain. A plant competition model shows that the disturbances associated with sediment deposition are necessary for the high marsh species to outcompete the mid-marsh grasses during rapid transgression. Marsh retreat creates a moving framework of physical gradients and disturbances that promote the co-existence of over ten different species adjacent to the marsh edge in an otherwise species-poor landscape.
| S-EPMC6453922 | biostudies-literature
Project description:Seed bank survival underpins plant population persistence but studies on seed bank trait-environment interactions are few. Changes in environmental conditions relevant to seed banks occur in desert ecosystems owing to solar energy development. We developed a conceptual model of seed bank survival to complement methodologies using in-situ seed bank packets. Using this framework, we quantified the seed bank survival of two closely related annual desert plant species, one rare (Eriophyllum mohavense) and one common (Eriophyllum wallacei), and the seed bank-environment interactions of these two species in the Mojave Desert within a system that emulates microhabitat variation associated with solar energy development. We tracked 4860 seeds buried across 540 seed packets and found, averaged across both species, that seed bank survival was 21% and 6% for the first and second growing seasons, respectively. After two growing seasons, the rare annual had a significantly greater seed bank survival (10%) than the common annual (2%). Seed bank survival across both species was significantly greater in shade (10%) microhabitats compared to runoff (5%) and control microhabitats (3%). Our study proffers insight into this early life-stage across rare and common congeners and their environmental interactions using a novel conceptual framework for seed bank survival.
| S-EPMC7570262 | biostudies-literature
Project description:BackgroundThe evolution of land plants is characterized by whole genome duplications (WGD), which drove species diversification and evolutionary novelties. Detecting these events is especially difficult if they date back to the origin of the plant kingdom. Established methods for reconstructing WGDs include intra- and inter-genome comparisons, KS age distribution analyses, and phylogenetic tree constructions.ResultsBy analysing 67 completely sequenced plant genomes 775 myosins were identified and manually assembled. Phylogenetic trees of the myosin motor domains revealed orthologous and paralogous relationships and were consistent with recent species trees. Based on the myosin inventories and the phylogenetic trees, we have identified duplications of the entire myosin motor protein family at timings consistent with 23 WGDs, that had been reported before. We also predict 6 WGDs based on further protein family duplications. Notably, the myosin data support the two recently reported WGDs in the common ancestor of all extant angiosperms. We predict single WGDs in the Manihot esculenta and Nicotiana benthamiana lineages, two WGDs for Linum usitatissimum and Phoenix dactylifera, and a triplication or two WGDs for Gossypium raimondii. Our data show another myosin duplication in the ancestor of the angiosperms that could be either the result of a single gene duplication or a remnant of a WGD.ConclusionsWe have shown that the myosin inventories in angiosperms retain evidence of numerous WGDs that happened throughout plant evolution. In contrast to other protein families, many myosins are still present in extant species. They are closely related and have similar domain architectures, and their phylogenetic grouping follows the genome duplications. Because of its broad taxonomic sampling the dataset provides the basis for reliable future identification of further whole genome duplications.
| S-EPMC3850447 | biostudies-literature
Project description:Background and aimsLarge, persistent seed banks contribute to the invasiveness of non-native plants, and maternal plant size is an important contributory factor. We explored the relationships between plant vegetative size (V) and soil seed bank size (S) for the invasive shrub Ulex europaeus in its native range and in non-native populations, and identified which other factors may contribute to seed bank variation between native and invaded regions.MethodsWe compared the native region (France) with two regions where Ulex is invasive, one with seed predators introduced for biological control (New Zealand) and another where seed predators are absent (La Réunion). We quantified seed bank size, plant dimensions, seed predation and soil fertility for six stands in each of the three regions.Key resultsSeed banks were 9-14 times larger in the two invaded regions compared to native France. We found a positive relationship between current seed bank size and actual plant size, and that any deviation from this relationship was probably due to large differences in seed predation and/or soil fertility. We further identified three possible factors explaining larger seed banks in non-native environments: larger maternal plant size, lower activity of seed predators and higher soil fertility.ConclusionsIn highlighting a positive relationship between maternal plant size and seed bank size, and identifying additional factors that regulate soil seed bank dynamics in non-native ranges, our data offer a number of opportunities for invasive weed control. For non-native Ulex populations specifically, management focusing on 'S' (i.e. the reduction of the seed bank by stimulating germination, or the introduction of seed predators as biological control agents) and/or on 'V' (i.e. by cutting mature stands to reduce maternal plant biomass) offers the most probable combination of effective control options.
| S-EPMC6526314 | biostudies-literature
Project description:Salt marshes form along coastlines and are very interesting ecosystems due to their function and services. In the future, salt marsh plants might provide food and medicine as crops irrigated via seawater in hyper-arid regions. In the Arabian Gulf, little is known about salt marsh vegetation. Therefore, a targeted search on scientific literature was performed to provide a comprehensive assessment. Hence, current knowledge of the extent and status of salt marsh in the Arabian Gulf region was reviewed, based on literature-based analysis. Then, historic trends of salt marsh publications were carefully inspected. This study provides a list of salt marsh families and their genera and species, with a total of 51 family 179 genera 316 species in the Arabian Gulf. The largest family was Chenopodiaceae followed by Poaceae, Asteraceae. Moreover, this study identified some of the gaps that could help future directions for scientific research, and help making decisions of conservation, management policies and procedures.
| S-EPMC8459078 | biostudies-literature
Project description:Background and aimsEcosystem-based flood defence including salt-marsh as a key component is increasingly applied worldwide due to its multifunctionality and cost-effectiveness. While numerous experiments have explored the wave-attenuation effects of salt-marsh plants critical to flood protection, little is known about the physiological and biochemical responses of these species to continuous wave exposure.MethodsTo address this knowledge gap, we developed a shallow-water wave simulator to expose individual Spartina alterniflora plants to waves in a greenhouse for 8 weeks. S. alterniflora individuals were partially submerged and experienced horizontal sinusoidal motion to mimic plant exposure to shallow water waves. A factorial experiment was used to test the effects of three wave heights (4.1 cm, 5.5 cm and a no-wave control) and two wave periods (2 s and 3 s) on the following key physiological and biochemical plant parameters: plant growth, antioxidant defence and photosynthetic capacity.Key resultsComparison of wave treatment and control groups supported our hypotheses that wave exposure leads to oxidative stress in plants and suppresses plant photosynthetic capacity and thereby growth. In response, the wave-exposed plants exhibited activated antioxidant enzymes. Comparison between the different wave treatment groups suggested the wave effects to be generally correlated positively with wave height and negatively with wave period, i.e. waves with greater height and frequency imposed more stress on plants. In addition, wave-exposed plants tended to allocate more biomass to their roots. Such allocation is favourable because it enhances root anchorage against the wave impact.ConclusionsSimulated wave exposure systems such as the one used here are an effective tool for studying the response of salt-marsh plants to long-term wave exposure, and so help inform ecosystem-based flood defence projects in terms of plant selection, suitable transplantation locations and timing, etc. Given the projected variability of the global wave environment due to climate change, understanding plant response to long-term wave exposure has important implications for salt-marsh conservation and its central role in natural flood defence.
| S-EPMC7442346 | biostudies-literature