A century-long record of plant evolution reconstructed from a coastal marsh seed bank.
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ABSTRACT:
SUBMITTER: Blum MJ
PROVIDER: S-EPMC8327947 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Background and aimsThe capacity for dispersal to promote or hinder species' responses to global change remains a major question in ecology. One ecosystem experiencing rapid change is the tidal marsh, which is migrating inland in response to accelerated sea level rise. Few studies to date have investigated the ecological dynamics that impact this large-scale migration. Seed dispersal and persistence in the soil seed bank is a component that can be strongly indicative of community trajectories. With this in mind, the aim of our study was to characterize the germinable seed bank across a marsh-forest ecotone in the Chesapeake Bay.MethodsSoil samples were collected across transects that ran from the high marsh to the coastal loblolly pine forest in a brackish marsh in Blackwater National Wildlife Refuge, MD, USA. Samples were grown in a greenhouse and watered with either freshwater or 3 ppt seawater solution. We compared community composition across transects and between salinity treatments. Additionally, we compared the seed bank with standing vegetation and used seed trait data from the TRY Database to investigate changes in functional traits along this ecotone.Key resultsWe found halophytic species dispersing up to 15 m into the forest and a general lack of obligate upland species, including near absence of Pinus taeda, the dominant species in the forest canopy. A majority of species detected in the seed bank were wetland species of various types, with species with wide salinity tolerance arising most frequently. Salinity addition had a significant negative influence on seed bank diversity.ConclusionOverall, our seed bank results suggest that dispersal and germination under the conditions of saltwater intrusion will limit forest regeneration and favour marsh plant dispersal. This indicates that the ecological processes that determine the soil seed bank community will support continued migration of marsh species into uplands.
| S-EPMC7442344 | biostudies-literature
Project description:Stratigraphic accretion of dormant propagules in soil can result in natural archives useful for studying ecological and evolutionary responses to environmental change. Few attempts have been made, however, to use soil-stored seed banks as natural archives, in part because of concerns over nonrandom attrition and mixed stratification. Here, we examine the persistent seed bank of Schoenoplectus americanus, a foundational brackish marsh sedge, to determine whether it can serve as a resource for reconstructing historical records of demographic and population genetic variation. After assembling profiles of the seed bank from radionuclide-dated soil cores, we germinated seeds to "resurrect" cohorts spanning the 20th century. Using microsatellite markers, we assessed genetic diversity and differentiation among depth cohorts, drawing comparisons to extant plants at the study site and in nearby and more distant marshes. We found that seed density peaked at intermediate soil depths. We also detected genotypic differences among cohorts as well as between cohorts and extant plants. Genetic diversity did not decline with depth, indicating that the observed pattern of differentiation is not due to attrition. Patterns of differentiation within and among extant marshes also suggest that local populations persist as aggregates of small clones, likely reflecting repeated seedling recruitment and low immigration from admixed regional gene pools. These findings indicate that persistent and stratified soil-stored seed banks merit further consideration as resources for reconstructing decadal- to century-long records that can lend insight into the tempo and nature of ecological and evolutionary processes that shape populations over time.
| S-EPMC6183470 | biostudies-literature
Project description:Dispersal is an important factor in plant community assembly, but assembly studies seldom include information on actual dispersal into communities, i.e. the local propagule pool. The aim of this study was to determine which factors influence plant community assembly by focusing on two phases of the assembly process: the dispersal phase and the establishment phase. At 12 study sites in grazed ex-arable fields in Sweden the local plant community was determined and in a 100-m radius around the centre of each site, the regional species pool was measured. The local seed bank and the seed rain was explored to estimate the local propagule pool. Trait-based models were then applied to investigate if species traits (height, seed mass, clonal abilities, specific leaf area and dispersal method) and regional abundance influenced which species from the regional species pool, dispersed to the local community (dispersal phase) and which established (establishment phase). Filtering of species during the dispersal phase indicates the effect of seed limitation while filtering during the establishment phase indicates microsite limitation. On average 36% of the regional species pool dispersed to the local sites and of those 78% did establish. Species with enhanced dispersal abilities, e.g. higher regional abundance, smaller seeds and dispersed by cattle, were more likely to disperse to the sites than other species. At half the sites, dispersal was influenced by species height. Species establishment was however mainly unlinked to the traits included in this study. This study underlines the importance of seed limitation in local plant community assembly. It also suggests that without information on species dispersal into a site, it is difficult to distinguish between the influence of dispersal and establishment abilities, and thus seed and microsite limitation, as both can be linked to the same trait.
| S-EPMC4109992 | biostudies-literature
Project description:Dormancy is a bet-hedging strategy that allows organisms to persist through conditions that are suboptimal for growth and reproduction by entering a reversible state of reduced metabolic activity. Dormancy allows a population to maintain a reservoir of genetic and phenotypic diversity (i.e., a seed bank) that can contribute to the long-term survival of a population. This strategy can be potentially adaptive and has long been of interest to ecologists and evolutionary biologists. However, comparatively little is known about how dormancy influences the fundamental evolutionary forces of genetic drift, mutation, selection, recombination, and gene flow. Here, we investigate how seed banks affect the processes underpinning evolution by reviewing existing theory, implementing novel simulations, and determining how and when dormancy can influence evolution as a population genetic process. We extend our analysis to examine how seed banks can alter macroevolutionary processes, including rates of speciation and extinction. Through the lens of population genetic theory, we can understand the extent that seed banks influence the evolutionary dynamics of microorganisms as well as other taxa.
| S-EPMC5748526 | biostudies-literature
Project description:PremiseTo conserve native plants, many institutions are turning toward ex-situ conservation methods, such as storage in seed banks; however, not all seeds are able to survive in seed bank conditions, or may not in the long term. Experimental aging has shown that alpine species lose viability more quickly than low-elevation species. Furthermore, the germination requirements for rare species are largely unknown, but are a necessary first step in understanding storage behavior and viability decline.MethodsFive alpine species were subjected to germination and accelerated aging experiments to understand their longevity in storage. For the accelerated aging experiment, the seeds were rehydrated in a dark incubator and subsequently placed in a drying oven. Following the aging process, the seeds were placed into previously determined germination conditions.ResultsAll species had p 50 values of <13.7 days, which is the threshold to consider a species short lived. These results suggest that we cannot haphazardly store seeds and assume that all species will survive for decades.DiscussionAccelerated aging experiments are not a perfect measure of seed longevity, and true longevity needs to be empirically determined. However, this experimental method allows us to predict which species may be short lived and whether alternative ex-situ conservation methods might be needed beyond conventional seed banking.
| S-EPMC9575086 | biostudies-literature
Project description:Marsh edge retreat by wave erosion, an ubiquitous process along estuaries, could affect vegetation dynamics in ways that differ from well-established elevation-driven interactions. Along the marshes of Delaware Bay (USA) we show that species composition from marsh edge to interior is driven by gradients in wave stress, bed elevation, and sediment deposition. At the marsh edge, large wave stress allows only short-statured species. Approximately 17m landward, decreasing wave stress and increasing deposition cause the formation of a ridge. There, high marsh fugitive and shrub species prevails. Both the marsh edge and the ridge retreat synchronously by several meters per year causing wave energy and deposition to change rapidly. Yet, the whole ecogeomorphologic profile translates landward in a dynamic equilibrium, where the low marsh replaces the high marsh ridge community and the high marsh ridge community replaces the mid-marsh grasses on the marsh plain. A plant competition model shows that the disturbances associated with sediment deposition are necessary for the high marsh species to outcompete the mid-marsh grasses during rapid transgression. Marsh retreat creates a moving framework of physical gradients and disturbances that promote the co-existence of over ten different species adjacent to the marsh edge in an otherwise species-poor landscape.
| S-EPMC6453922 | biostudies-literature
Project description:Seed bank survival underpins plant population persistence but studies on seed bank trait-environment interactions are few. Changes in environmental conditions relevant to seed banks occur in desert ecosystems owing to solar energy development. We developed a conceptual model of seed bank survival to complement methodologies using in-situ seed bank packets. Using this framework, we quantified the seed bank survival of two closely related annual desert plant species, one rare (Eriophyllum mohavense) and one common (Eriophyllum wallacei), and the seed bank-environment interactions of these two species in the Mojave Desert within a system that emulates microhabitat variation associated with solar energy development. We tracked 4860 seeds buried across 540 seed packets and found, averaged across both species, that seed bank survival was 21% and 6% for the first and second growing seasons, respectively. After two growing seasons, the rare annual had a significantly greater seed bank survival (10%) than the common annual (2%). Seed bank survival across both species was significantly greater in shade (10%) microhabitats compared to runoff (5%) and control microhabitats (3%). Our study proffers insight into this early life-stage across rare and common congeners and their environmental interactions using a novel conceptual framework for seed bank survival.
| S-EPMC7570262 | biostudies-literature
Project description:BackgroundThe evolution of land plants is characterized by whole genome duplications (WGD), which drove species diversification and evolutionary novelties. Detecting these events is especially difficult if they date back to the origin of the plant kingdom. Established methods for reconstructing WGDs include intra- and inter-genome comparisons, KS age distribution analyses, and phylogenetic tree constructions.ResultsBy analysing 67 completely sequenced plant genomes 775 myosins were identified and manually assembled. Phylogenetic trees of the myosin motor domains revealed orthologous and paralogous relationships and were consistent with recent species trees. Based on the myosin inventories and the phylogenetic trees, we have identified duplications of the entire myosin motor protein family at timings consistent with 23 WGDs, that had been reported before. We also predict 6 WGDs based on further protein family duplications. Notably, the myosin data support the two recently reported WGDs in the common ancestor of all extant angiosperms. We predict single WGDs in the Manihot esculenta and Nicotiana benthamiana lineages, two WGDs for Linum usitatissimum and Phoenix dactylifera, and a triplication or two WGDs for Gossypium raimondii. Our data show another myosin duplication in the ancestor of the angiosperms that could be either the result of a single gene duplication or a remnant of a WGD.ConclusionsWe have shown that the myosin inventories in angiosperms retain evidence of numerous WGDs that happened throughout plant evolution. In contrast to other protein families, many myosins are still present in extant species. They are closely related and have similar domain architectures, and their phylogenetic grouping follows the genome duplications. Because of its broad taxonomic sampling the dataset provides the basis for reliable future identification of further whole genome duplications.
| S-EPMC3850447 | biostudies-literature
Project description:Dormancy is an adaptation to living in fluctuating environments. It allows individuals to enter a reversible state of reduced metabolic activity when challenged by unfavorable conditions. Dormancy can also influence species interactions by providing organisms with a refuge from predators and parasites. Here we test the hypothesis that, by generating a seed bank of protected individuals, dormancy can modify the patterns and processes of antagonistic coevolution. We conducted a factorially designed experiment where we passaged a bacterial host (Bacillus subtilis) and its phage (SPO1) in the presence versus absence of a seed bank consisting of dormant endospores. Owing in part to the inability of phages to attach to spores, seed banks stabilized population dynamics and resulted in minimum host densities that were 30-fold higher compared to bacteria that were unable to engage in dormancy. By supplying a refuge to phage-sensitive strains, we show that seed banks retained phenotypic diversity that was otherwise lost to selection. Dormancy also stored genetic diversity. After characterizing allelic variation with pooled population sequencing, we found that seed banks retained twice as many host genes with mutations, whether phages were present or not. Based on mutational trajectories over the course of the experiment, we demonstrate that seed banks can dampen bacteria-phage coevolution. Not only does dormancy create structure and memory that buffers populations against environmental fluctuations, it also modifies species interactions in ways that can feed back onto the eco-evolutionary dynamics of microbial communities.
| S-EPMC10356755 | biostudies-literature
Project description:Microplastic (MP) pollution is one of the greatest threats to marine ecosystems. Cold seeps are characterized by methane-rich fluid seepage fueling one of the richest ecosystems on the seafloor, and there are approximately more than 900 cold seeps globally. While the long-term evolution of MPs in cold seeps remains unclear. Here, how MPs have been deposited in the Haima cold seep since the invention of plastics is demonstrated. It is found that the burial rates of MPs in the non-seepage areas significantly increased since the massive global use of plastics in the 1930s, nevertheless, the burial rates and abundance of MPs in the methane seepage areas are much lower than the non-seepage area of the cold seep, suggesting the degradation potential of MPs in cold seeps. More MP-degrading microorganism populations and functional genes are discovered in methane seepage areas to support this discovery. It is further investigated that the upwelling fluid seepage facilitated the fragmentation and degradation behaviors of MPs. Risk assessment indicated that long-term transport and transformation of MPs in the deeper sediments can reduce the potential environmental and ecological risks. The findings illuminated the need to determine fundamental strategies for sustainable marine plastic pollution mitigation in the natural deep-sea environments.
| S-EPMC10074074 | biostudies-literature