Dataset Information

Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia.

ABSTRACT: In this study, we sequenced the complete plastid genome (plastome) of Neolitsea aciculata, an evergreen broad-leaved tree endemic to East Asia, a woody component of East Asian warm-temperate and subtropical forests across China, Korea, and Japan. The plastome of N. aciculata is assembled as a single contig (152,722 bp). A large and a small single copy (93,785 and 18,795 bp, respectively) of the genome are separated by a pair of inverted repeats (20,071 bp). The genome consists of 126 genes, including 80 protein-coding, eight ribosomal RNA, and 36 transfer RNA genes. Two genes in the IR region (ycf1 and ycf2) are pseudogenized. Our phylogenetic analysis revealed the phylogenetic position of N. aciculata in a highly supported clade of the genus Neolitsea along with other two congeners, N. pallens and N. sericea.

SUBMITTER: Han EK

PROVIDER: S-EPMC8330707 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

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Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia.

Han Eun-Kyeong EK Amarsanaa Gantsetseg G Kim Jung-Hyun JH So Soonku S Choi In-Su IS Lee Jung-Hyun JH

Mitochondrial DNA. Part B, Resources 20210802 9

In this study, we sequenced the complete plastid genome (plastome) of Neolitsea aciculata, an evergreen broad-leaved tree endemic to East Asia, a woody component of East Asian warm-temperate and subtropical forests across China, Korea, and Japan. The plastome of N. aciculata is assembled as a single contig (152,722 bp). A large and a small single copy (93,785 and 18,795 bp, respectively) of the genome are separated by a pair of inverted repeats (20,071 bp). The genome consists of 1 ...[more]

PMID: 34377827

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Project description:BackgroundThe broad continuum between tropical and temperate floras in Eastern Asia (EAS) are thought to be one of the main factors responsible for a prominent species diversity anomaly of temperate plants between EAS and eastern North America (ENS). However, how the broad continuum and niche evolution between tropical and temperate floras in EAS contributes to lineage divergence and species diversity remains largely unknown.ResultsPopulation genetic structure, demography, and determinants of genetic structure [i.e., isolation-by-distance (IBD), isolation-by-resistance (IBR), and isolation-by-environment (IBE)] of Machilus thunbergii Sieb. et Zucc. (Lauraceae) were evaluated by examining sequence variation of ten low-copy nuclear genes across 43 populations in southeast China. Climatic niche difference and potential distributions across four periods (Current, mid-Holocene, the last glacial maximum, the last interglacial) of two genetic clusters were determined by niche modelling. North and south clusters of populations in M. thunbergii were revealed and their demarcation line corresponds well with the northern boundary of tropical zone in China of Zhu & Wan. The divergence time between the clusters and demographic expansion of M. thunbergii occurred after the mid-Pleistocene climate transition (MPT, 0.8-1.2 Ma). Migration rates between clusters were asymmetrical, being much greater from north to south than the reverse. Significant effects of IBE, but non-significant effects of IBD and IBR on population genetic divergence were detected. The two clusters have different ecological niches and require different temperature regimes.ConclusionsThe north-south genetic differentiation may be common across the temperate-tropical boundary in southeast China. Divergent selection under different temperature regimes (possibly above and below freezing temperature in winter) could account for this divergence pattern. The broad continuum between tropical and temperate floras in EAS may have provided ample opportunities for tropical plant lineages to acquire freezing tolerance and to colonize the temperate regions during the late-Cenozoic global cooling. Our findings shed deeper insights into the high temperate plant species diversity in EAS.

Project description:Successful growth of a tree is the result of combined effects of biotic and abiotic factors. It is important to understand how biotic and abiotic factors affect changes in forest structure and dynamics under environmental fluctuations. In this study, we explored the effects of initial size [diameter at breast height (DBH)], neighborhood competition, and site condition on tree growth, based on a 3-year monitoring of tree growth rate in a permanent plot (120 × 80 m) of montane Fagus engleriana-Cyclobalanopsis multiervis mixed forest on Mt. Shennongjia, China. We measured DBH increments every 6 months from October 2011 to October 2014 by field-made dendrometers and calculated the mean annual growth rate over the 3 years for each individual tree. We also measured and calculated twelve soil properties and five topographic variables for 384 grids of 5 × 5 m. We defined two distance-dependent neighborhood competition indices with and without considerations of phylogenetic relatedness between trees and tested for significant differences in growth rates among functional groups. On average, trees in this mixed montane forest grew 0.07 cm year-1 in DBH. Deciduous, canopy, and early-successional species grew faster than evergreen, small-statured, and late-successional species, respectively. Growth rates increased with initial DBH, but were not significantly related to neighborhood competition and site condition for overall trees. Phylogenetic relatedness between trees did not influence the neighborhood competition. Different factors were found to influence tree growth rates of different functional groups: Initial DBH was the dominant factor for all tree groups; neighborhood competition within 5 m radius decreased growth rates of evergreen trees; and site condition tended to be more related to growth rates of fast-growing trees (deciduous, canopy, pioneer, and early-successional species) than the slow-growing trees (evergreen, understory, and late-successional species).

Project description:Understanding climatic influences on the proportion of evergreen versus deciduous broad-leaved tree species in forests is of crucial importance when predicting the impact of climate change on broad-leaved forests. Here, we quantified the geographical distribution of evergreen versus deciduous broad-leaved tree species in subtropical China. The Relative Importance Value index (RIV) was used to examine regional patterns in tree species dominance and was related to three key climatic variables: mean annual temperature (MAT), minimum temperature of the coldest month (MinT), and mean annual precipitation (MAP). We found the RIV of evergreen species to decrease with latitude at a lapse rate of 10% per degree between 23.5 and 25°N, 1% per degree at 25-29.1°N, and 15% per degree at 29.1-34°N. The RIV of evergreen species increased with: MinT at a lapse rate of 10% per °C between -4.5 and 2.5°C and 2% per °C at 2.5-10.5°C; MAP at a lapse rate of 10% per 100 mm between 900 and 1,600 mm and 4% per 100 mm between 1,600 and 2,250 mm. All selected climatic variables cumulatively explained 71% of the geographical variation in dominance of evergreen and deciduous broad-leaved tree species and the climatic variables, ranked in order of decreasing effects were as follows: MinT > MAP > MAT. We further proposed that the latitudinal limit of evergreen and deciduous broad-leaved mixed forests was 29.1-32°N, corresponding with MAT of 11-18.1°C, MinT of -2.5 to 2.51°C, and MAP of 1,000-1,630 mm. This study is the first quantitative assessment of climatic correlates with the evergreenness and deciduousness of broad-leaved forests in subtropical China and underscores that extreme cold temperature is the most important climatic determinant of evergreen and deciduous broad-leaved tree species' distributions, a finding that confirms earlier qualitative studies. Our findings also offer new insight into the definition and distribution of the mixed forest and an accurate assessment of vulnerability of mixed forests to future climate change.

Dataset Information

Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia.

Publications

Complete plastid genome sequence of <i>Neolitsea aciculata</i> (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia.

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