Sparse Granger Causality Analysis Model Based on Sensors Correlation for Emotion Recognition Classification in Electroencephalography.
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ABSTRACT:
SUBMITTER: Chen D
PROVIDER: S-EPMC8358835 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Emotion recognition based on electroencephalography (EEG) signals is a current focus in brain-computer interface research. However, the classification of EEG is difficult owing to large amounts of data and high levels of noise. Therefore, it is important to determine how to effectively extract features that include important information. Regularization, one of the effective methods for EEG signal processing, can effectively extract important features from the signal and has potential applications in EEG emotion recognition. Currently, the most popular regularization technique is Lasso (L 1) and Ridge Regression (L 2). In recent years, researchers have proposed many other regularization terms. In theory, L q -type regularization has a lower q value, which means that it can be used to find solutions with better sparsity. L 1/2 regularization is of L q type (0 < q < 1) and has been shown to have many attractive properties. In this work, we studied the L 1/2 penalty in sparse logistic regression for three-classification EEG emotion recognition, and used a coordinate descent algorithm and a univariate semi-threshold operator to implement L 1/2 penalty logistic regression. The experimental results on simulation and real data demonstrate that our proposed method is better than other existing regularization methods. Sparse logistic regression with L 1/2 penalty achieves higher classification accuracy than the conventional L 1, Ridge Regression, and Elastic Net regularization methods, using fewer but more informative EEG signals. This is very important for high-dimensional small-sample EEG data and can help researchers to reduce computational complexity and improve computational accuracy. Therefore, we propose that sparse logistic regression with the L 1/2 penalty is an effective technique for emotion recognition in practical classification problems.
| S-EPMC7427509 | biostudies-literature
Project description:Objectives: To investigate the performance of substate classification of children with benign epilepsy with centrotemporal spikes (BECTS) by granger causality density (GCD) based support vector machine (SVM) model. Methods: Forty-two children with BECTS (21 females, 21 males; mean age, 8.6 ± 1.96 years) were classified into interictal epileptic discharges (IEDs; 11 females, 10 males) and non-IEDs (10 females, 11 males) substates depending on presence of central-temporal spikes or not. GCD was calculated on four metrics, including inflow, outflow, total-flow (inflow + outflow) and int-flow (inflow - outflow) connectivity. SVM classifier was applied to discriminate the two substates. Results: The Rolandic area, caudate, dorsal attention network, visual cortex, language networks, and cerebellum had discriminative effect on distinguishing the two substates. Relative to each of the four GCD metrics, using combined metrics could reach up the classification performance (best value; AUC, 0.928; accuracy rate, 90.83%; sensitivity, 90%; specificity, 95%), especially for the combinations with more than three GCD metrics. Specially, combined the inflow, outflow and int-flow metric received the best classification performance with the highest AUC value, classification accuracy and specificity. Furthermore, the GCD-SVM model received good and stable classification performance across 14 dimension reduced data sets. Conclusions: The GCD-SVM model could be used for BECTS substate classification, which might have the potential to provide a promising model for IEDs detection. This may help assist clinicians for administer drugs and prognosis evaluation.
| S-EPMC6868120 | biostudies-literature
Project description:While most classical approaches to Granger causality detection assume linear dynamics, many interactions in real-world applications, like neuroscience and genomics, are inherently nonlinear. In these cases, using linear models may lead to inconsistent estimation of Granger causal interactions. We propose a class of nonlinear methods by applying structured multilayer perceptrons (MLPs) or recurrent neural networks (RNNs) combined with sparsity-inducing penalties on the weights. By encouraging specific sets of weights to be zero-in particular, through the use of convex group-lasso penalties-we can extract the Granger causal structure. To further contrast with traditional approaches, our framework naturally enables us to efficiently capture long-range dependencies between series either via our RNNs or through an automatic lag selection in the MLP. We show that our neural Granger causality methods outperform state-of-the-art nonlinear Granger causality methods on the DREAM3 challenge data. This data consists of nonlinear gene expression and regulation time courses with only a limited number of time points. The successes we show in this challenging dataset provide a powerful example of how deep learning can be useful in cases that go beyond prediction on large datasets. We likewise illustrate our methods in detecting nonlinear interactions in a human motion capture dataset.
| S-EPMC9739174 | biostudies-literature
Project description:BackgroundThe mechanisms sustaining myocardial fibrillation remain disputed, partly due to a lack of mapping tools that can accurately identify the mechanism with low spatial resolution clinical recordings. Granger causality (GC) analysis, an econometric tool for quantifying causal relationships between complex time-series, was developed as a novel fibrillation mapping tool and adapted to low spatial resolution sequentially acquired data.MethodsVentricular fibrillation (VF) optical mapping was performed in Langendorff-perfused Sprague-Dawley rat hearts (n=18), where novel algorithms were developed using GC-based analysis to (1) quantify causal dependence of neighboring signals and plot GC vectors, (2) quantify global organization with the causality pairing index, a measure of neighboring causal signal pairs, and (3) localize rotational drivers (RDs) by quantifying the circular interdependence of neighboring signals with the circular interdependence value. GC-based mapping tools were optimized for low spatial resolution from downsampled optical mapping data, validated against high-resolution phase analysis and further tested in previous VF optical mapping recordings of coronary perfused donor heart left ventricular wedge preparations (n=12), and adapted for sequentially acquired intracardiac electrograms during human persistent atrial fibrillation mapping (n=16).ResultsGlobal VF organization quantified by causality pairing index showed a negative correlation at progressively lower resolutions (50% resolution: P=0.006, R2=0.38, 12.5% resolution, P=0.004, R2=0.41) with a phase analysis derived measure of disorganization, locations occupied by phase singularities. In organized VF with high causality pairing index values, GC vector mapping characterized dominant propagating patterns and localized stable RDs, with the circular interdependence value showing a significant difference in driver versus nondriver regions (0.91±0.05 versus 0.35±0.06, P=0.0002). These findings were further confirmed in human VF. In persistent atrial fibrillation, a positive correlation was found between the causality pairing index and presence of stable RDs (P=0.0005,R2=0.56). Fifty percent of patients had RDs, with a low incidence of 0.9±0.3 RDs per patient.ConclusionsGC-based fibrillation analysis can measure global fibrillation organization, characterize dominant propagating patterns, and map RDs using low spatial resolution sequentially acquired data.
| S-EPMC7069398 | biostudies-literature
Project description:A number of studies have tried to exploit subtle phase differences in BOLD time series to resolve the order of sequential activation of brain regions, or more generally the ability of signal in one region to predict subsequent signal in another region. More recently, such lag-based measures have been applied to investigate directed functional connectivity, although this application has been controversial. We attempted to use large publicly available datasets (FCON 1000, ADHD 200, Human Connectome Project) to determine whether consistent spatial patterns of Granger Causality are observed in typical fMRI data. For BOLD datasets from 1,240 typically developing subjects ages 7-40, we measured Granger causality between time series for every pair of 7,266 spherical ROIs covering the gray matter and 264 seed ROIs at hubs of the brain's functional network architecture. Granger causality estimates were strongly reproducible for connections in a test and replication sample (n=620 subjects for each group), as well as in data from a single subject scanned repeatedly, both during resting and passive video viewing. The same effect was even stronger in high temporal resolution fMRI data from the Human Connectome Project, and was observed independently in data collected during performance of 7 task paradigms. The spatial distribution of Granger causality reflected vascular anatomy with a progression from Granger causality sources, in Circle of Willis arterial inflow distributions, to sinks, near large venous vascular structures such as dural venous sinuses and at the periphery of the brain. Attempts to resolve BOLD phase differences with Granger causality should consider the possibility of reproducible vascular confounds, a problem that is independent of the known regional variability of the hemodynamic response.
| S-EPMC3862772 | biostudies-literature
Project description:Estimating and modeling functional connectivity in the brain is a challenging problem with potential applications in the understanding of brain organization and various neurological and neuropsychological conditions. An important objective in connectivity analysis is to determine the connections between regions of interest in the brain. However, traditional functional connectivity analyses have frequently focused on modeling interactions between time series recordings at individual sensors, voxels, or vertices despite the fact that a single region of interest will often include multiple such recordings. In this paper, we present a novel measure of interaction between regions of interest rather than individual signals. The proposed measure, termed canonical Granger causality, combines ideas from canonical correlation and Granger causality analysis to yield a measure that reflects directed causality between two regions of interest. In particular, canonical Granger causality uses optimized linear combinations of signals from each region of interest to enable accurate causality measurements from substantially less data compared to alternative multivariate methods that have previously been proposed for this scenario. The optimized linear combinations are obtained using a variation of a technique developed for optimization on the Stiefel manifold. We demonstrate the advantages of canonical Granger causality in comparison to alternative causality measures for a range of different simulated datasets. We also apply the proposed measure to local field potential data recorded in a macaque brain during a visuomotor task. Results demonstrate that canonical Granger causality can be used to identify causal relationships between striate and prestriate cortexes in cases where standard Granger causality is unable to identify statistically significant interactions.
| S-EPMC4026328 | biostudies-literature
Project description:Objective: Numerous communication support systems based on reminiscence therapy have been developed. However, when using communication support systems, the emotional assessment of older people is generally conducted using verbal feedback or questionnaires. The purpose of this study is to investigate the feasibility of using Electroencephalography (EEG) signals for automatic emotion recognition during RT for older people. Participants: Eleven older people (mean 71.25, SD 4.66) and seven young people (mean 22.4, SD 1.51) participated in the experiment. Methods: Old public photographs were used as material for reminiscence therapy. The EEG signals of the older people were collected while the older people and young people were talking about the contents of the photos. Since emotions change slowly and responses are characterized by delayed effects in EEG, the depth models LSTM and Bi-LSTM were selected to extract complex emotional features from EEG signals for automatic recognition of emotions. Results: The EEG data of 8 channels were inputted into the LSTM and Bi-LSTM models to classify positive and negative emotions. The recognition highest accuracy rate of the two models were 90.8% and 95.8% respectively. The four-channel EEG data based Bi-LSTM also reached 94.4%. Conclusion: Since the Bi-LSTM model could tap into the influence of "past" and "future" emotional states on the current emotional state in the EEG signal, we found that it can help improve the ability to recognize positive and negative emotions in older people. In particular, it is feasible to use EEG signals without the necessity of multimodal physiological signals for emotion recognition in the communication support systems for reminiscence therapy when using this model.
| S-EPMC8777059 | biostudies-literature
Project description:Sparse sensor placement is a central challenge in the efficient characterization of complex systems when the cost of acquiring and processing data is high. Leading sparse sensing methods typically exploit either spatial or temporal correlations, but rarely both. This work introduces a sparse sensor optimization that is designed to leverage the rich spatiotemporal coherence exhibited by many systems. Our approach is inspired by the remarkable performance of flying insects, which use a few embedded strain-sensitive neurons to achieve rapid and robust flight control despite large gust disturbances. Specifically, we identify neural-inspired sensors at a few key locations on a flapping wing that are able to detect body rotation. This task is particularly challenging as the rotational twisting mode is three orders of magnitude smaller than the flapping modes. We show that nonlinear filtering in time, built to mimic strain-sensitive neurons, is essential to detect rotation, whereas instantaneous measurements fail. Optimized sparse sensor placement results in efficient classification with approximately 10 sensors, achieving the same accuracy and noise robustness as full measurements consisting of hundreds of sensors. Sparse sensing with neural-inspired encoding establishes an alternative paradigm in hyperefficient, embodied sensing of spatiotemporal data and sheds light on principles of biological sensing for agile flight control.
| S-EPMC6196534 | biostudies-literature
Project description:We introduce a novel method called Prophetic Granger Causality (PGC) for inferring gene regulatory networks (GRNs) from protein-level time series data. The method uses an L1-penalized regression adaptation of Granger Causality to model protein levels as a function of time, stimuli, and other perturbations. When combined with a data-independent network prior, the framework outperformed all other methods submitted to the HPN-DREAM 8 breast cancer network inference challenge. Our investigations reveal that PGC provides complementary information to other approaches, raising the performance of ensemble learners, while on its own achieves moderate performance. Thus, PGC serves as a valuable new tool in the bioinformatics toolkit for analyzing temporal datasets. We investigate the general and cell-specific interactions predicted by our method and find several novel interactions, demonstrating the utility of the approach in charting new tumor wiring.
| S-EPMC5718405 | biostudies-literature
Project description:An understanding of the in vivo spatial emergence of abnormal brain activity during spontaneous seizure onset is critical to future early seizure detection and closed-loop seizure prevention therapies. In this study, we use Granger causality (GC) to determine the strength and direction of relationships between local field potentials (LFPs) recorded from bilateral microelectrode arrays in an intermittent spontaneous seizure model of chronic temporal lobe epilepsy before, during, and after Racine grade partial onset generalized seizures. Our results indicate distinct patterns of directional GC relationships within the hippocampus, specifically from the CA1 subfield to the dentate gyrus, prior to and during seizure onset. Our results suggest sequential and hierarchical temporal relationships between the CA1 and dentate gyrus within and across hippocampal hemispheres during seizure. Additionally, our analysis suggests a reversal in the direction of GC relationships during seizure, from an abnormal pattern to more anatomically expected pattern. This reversal correlates well with the observed behavioral transition from tonic to clonic seizure in time-locked video. These findings highlight the utility of GC to reveal dynamic directional temporal relationships between multichannel LFP recordings from multiple brain regions during unprovoked spontaneous seizures.
| S-EPMC2867107 | biostudies-literature