Long-read whole-genome methylation patterning using enzymatic base conversion and nanopore sequencing.

ABSTRACT: Long-read whole-genome sequencing analysis of DNA methylation would provide useful information on the chromosomal context of gene expression regulation. Here we describe the development of a method that improves the read length generated by using the bisulfite-sequencing-based approach. In this method, we combined recently developed enzymatic base conversion, where an unmethylated cytosine (C) should be converted to thymine (T), with nanopore sequencing. After methylation-sensitive base conversion, the sequencing library was constructed using long-range polymerase chain reaction. This type of analysis is possible using a minimum of 1 ng genomic DNA, and an N50 read length of 3.4-7.6 kb is achieved. To analyze the produced data, which contained a substantial number of base mismatches due to

SUBMITTER: Sakamoto Y 

PROVIDER: S-EPMC8373077 | biostudies-literature | 2021 Aug

REPOSITORIES: biostudies-literature