Browse
Submit Data
Databases
API
Help

Dataset Information

15 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome Sequence of Hymenobacter polaris RP-2-7^T, Isolated from Arctic Soil.

ABSTRACT: Hymenobacter polaris RP-2-7^T was isolated from soil from the Arctic region. This study presents the genome sequence of Hymenobacter polaris RP-2-7^T, generated using the Illumina HiSeq platform. The genome size is 5,587,174 bp; it contains 4,721 genes and has 62.8 mol% DNA G+C content.

SUBMITTER: Sundararaman A

PROVIDER: S-EPMC8407713 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Draft Genome Sequence of Arcticibacter svalbardensis Strain MN12-7T, a Member of the Family Sphingobacteriaceae Isolated from an Arctic Soil Sample.

Project description:The 4.69-Mb genome sequence of Arcticibacter svalbardensis strain MN12-7(T), isolated from an Arctic soil sample, is reported.

| S-EPMC3709154 | biostudies-literature

Complete Genome Sequence of Rhodopseudomonas sp. Strain P2A-2r, Isolated from Arctic Soil.

Project description:Microorganisms of extremely cold habitats are unique objects for studying their biogeochemical properties and mechanisms. Here, we present the complete genome sequence of the strain Rhodopseudomonas sp. P2A-2r, isolated from arctic soil in Svalbard, Norway. The genome consists of a 6.7-Mbp circular chromosome.

| S-EPMC10019179 | biostudies-literature

The complete mitochondrial genome of Salix polaris, a specie in harsh arctic environment.

Project description:Salix polaris is a dwarf species of the genus Salix which distribute in harsh arctic environment. In this study, we sequenced and assembled whole mitochondrial genome of S. polaris for the first time. The complete mitochondrial genome sequence of this species is a circular molecule of 562920 bp in size, encoding 23 CDS, 21 tRNA genes, and 3 rRNA genes. Mitogenome based phylogenetic tree showed that Salix polaris clustered in the robust clade consist of all Salix species sampled in this study. The complete mitochondrial genome of Salix polaris adds new data into the whole mitochondrial genome of Salix, which is still scarce so far, and we anticipate the accumulation of mitogenome of Salix will facilitate phylogenetic study for this systematic difficult genus.

| S-EPMC7782335 | biostudies-literature

Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses.

Project description:Global climate change-induced warming of the Artic seas is predicted to shift the phytoplankton community towards dominance of smaller-sized species due to global warming. Yet, little is known about their viral mortality agents despite the ecological importance of viruses regulating phytoplankton host dynamics and diversity. Here we report the isolation and basic characterization of four prasinoviruses infectious to the common Arctic picophytoplankter Micromonas. We furthermore assessed how temperature influenced viral infectivity and production. Phylogenetic analysis indicated that the putative double-stranded DNA (dsDNA) Micromonas polaris viruses (MpoVs) are prasinoviruses (Phycodnaviridae) of approximately 120 nm in particle size. One MpoV showed intrinsic differences to the other three viruses, i.e., larger genome size (205 ± 2 vs. 191 ± 3 Kb), broader host range, and longer latent period (39 vs. 18 h). Temperature increase shortened the latent periods (up to 50%), increased the burst size (up to 40%), and affected viral infectivity. However, the variability in response to temperature was high for the different viruses and host strains assessed, likely affecting the Arctic picoeukaryote community structure both in the short term (seasonal cycles) and long term (global warming).

| S-EPMC5490811 | biostudies-literature

Complete Genome Sequence of Pseudomonas sp. Strain NC02, Isolated from Soil.

Project description:We report here the complete genome sequence of Pseudomonas sp. strain NC02, isolated from soil in eastern Massachusetts. We assembled PacBio reads into a single closed contig with 132× mean coverage and then polished this contig using Illumina MiSeq reads, yielding a 6,890,566-bp sequence with 61.1% GC content.

| S-EPMC5814507 | biostudies-literature

Complete Genome Sequence of Escherichia-Infecting Phage CEC_KAZ_2018, Isolated from Soil.

Project description:Avian pathogenic Escherichia coli (APEC) bacteria are one of the main problems of the poultry industry. An effective way to combat colibacillosis is to use a phage preparation that lyses the bacteria. Here, we report the isolation of an E. coli-infecting phage, CEC_KAZ_2018, isolated from soil.

| S-EPMC6728635 | biostudies-literature

Draft Genome Sequence of Enterobacter oligotrophicus CCA3, Isolated from Leaf Soil.

Project description:Enterobacter oligotrophicus CCA3 was isolated from leaf soil collected in Hiroshima Prefecture, Japan. Here, we report the draft genome sequence of E. oligotrophicus CCA3. The draft genome sequence of E. oligotrophicus CCA3 consists of 29 contigs of 4,425,100 bp, with a GC content of 54.2%.

| S-EPMC7844073 | biostudies-literature

Complete Genome Sequence of Pseudomonas chilensis Strain ABC1, Isolated from Soil.

Project description:Here, we report the complete genome sequence of Pseudomonas chilensis strain ABC1, which was isolated from a soil interstitial water sample collected at the University Adolfo Ibañez, Valparaiso, Chile. We assembled PacBio reads into a single closed contig with 209× mean coverage, yielding a 4,035,896-bp sequence with 62% GC content and 3,555 predicted genes.

| S-EPMC7516146 | biostudies-literature

Complete Genome Sequence of Glutamicibacter sp. Strain M10, Isolated from an Arctic Permafrost Sample.

Project description:Permafrost is an extremely cold ecosystem that is inhabited by microorganisms with unique biochemical properties for potential biotechnological applications. Here, we present the complete genome sequence of Glutamicibacter sp. strain M10, which was isolated from a permafrost sample that had been collected at a depth of 2 m in West Spitsbergen, Norway.

| S-EPMC9933682 | biostudies-literature

Complete mitochondrial genome sequence and phylogenetic analysis of Lycodes polaris (Sabine, 1824).

Project description:Lycodes polaris is one of the most widely distributed and abundant eelpout species on the Arctic continental shelves with full mitogenome information unavailable. In this paper, complete mitochondrial genome of L. Polaris was determined with 16,595 bp in length, containing 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 2 non-coding regions (origin of light strand replication and control region). All the protein-coding genes choose ATG as start codon in addition to that COI using GTG. Most genes use TAA or TAG as the stop codon while three others ended with incomplete stop codons. Phylogenetic relationship of L. polaris was also reconstructed. Our result will provide important basis for further studies of L. polaris.

| S-EPMC7687599 | biostudies-literature