Browse
Submit Data
Databases
API
Help

Dataset Information

32 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Streptomyces Phage Salutena.

ABSTRACT: Streptomyces are Gram-negative soil bacteria that can degrade lignin and synthesize antibiotics. Some species cause mycetoma, pneumonitis, and bloodstream infections. Here, we present the genome sequence of the Streptomyces sp. strain Mg1 phage Salutena, a siphovirus in the subfamily Arquatrovirinae The genome is 51,993 bp, with 90 predicted protein-coding genes.

SUBMITTER: Kim J

PROVIDER: S-EPMC8407740 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Complete Genome Sequence of Streptomyces Phage Shaeky.

Project description:Here, we present the genome of siphophage Shaeky, infecting the Gram-positive bacterium Streptomyces sp. strain Mg1. Shaeky has very low sequence identity to other phages, with phage phiC31 being the most closely related in the NCBI database. The Shaeky genome is 45,617 bp with 77 protein-coding genes and 16 tRNAs.

| S-EPMC8407747 | biostudies-literature

Complete Genome Sequence of Streptomyces Phage Sentinel.

Project description:The Streptomyces genus produces over two-thirds of clinically useful, natural antibiotics. Here, we describe the isolation and genome annotation of siphophage Sentinel, which utilizes Streptomyces sp. strain Mg1 as a host. It has a 50,272-bp genome and 83 protein-coding genes and shows similarity to other Streptomyces phages in the Arequatrovirus genus.

| S-EPMC8407748 | biostudies-literature

Complete Genome Sequence of Streptomyces Phage Spernnie.

Project description:Streptomyces spp. are Gram-positive soil bacteria that have been reported in some cases to cause acute and chronic infections, including mycetomas, pneumonia, and septicemia. Here, we present Streptomyces sp. strain Mg1 phage Spernnie. Spernnie is a temperate siphophage containing 89 predicted coding genes in a 50,834-bp genome sequence.

| S-EPMC8407751 | biostudies-literature

Complete Genome Sequence of Streptomyces Phage Shady.

Project description:Streptomyces spp. are saprophytic soil bacteria that produce secondary metabolites with therapeutic potential. This announcement describes the isolation and genome annotation of Streptomyces sp. strain Mg1 siphophage Shady. Learning more about Shady's novel 45-kb genome, containing 76 predicted protein-coding genes, could be industrially advantageous when using streptomycetes for their products.

| S-EPMC8407745 | biostudies-literature

Complete Genome Sequence of the Streptomyces Phage Nanodon.

Project description:Streptomyces phage Nanodon is a temperate double-stranded DNA Siphoviridae belonging to cluster BD1. It was isolated from soil collected in Kilauea, HI, using Streptomyces griseus subsp. griseus as a host.

| S-EPMC5054309 | biostudies-literature

Complete Genome Sequence of <i>Streptomyces</i> Phage ϕRKBJ001 Isolated from Prince Edward Island, Canada.

Project description:We reported here the complete genome sequence of Streptomyces phage ϕRKBJ001 that was isolated from a saltwater marsh on Prince Edward Island, Canada, using the Streptomyces sp. strain RKBHB0173. Based on electron microscopy and genomic analysis, this phage belongs to the Siphoviridae family and the BN Streptomyces phage cluster.

| S-EPMC8852317 | biostudies-literature

The complete genome sequence of the Streptomyces temperate phage straight phiC31: evolutionary relationships to other viruses.

Project description:The completed genome sequence of the temperate Streptomyces phage straight phiC31 is reported. straight phiC31 contains genes that are related by sequence similarities to several other dsDNA phages infecting many diverse bacterial hosts, including Escherichia, Arthrobacter, Mycobacterium, Rhodobacter, Staphylococcus, Bacillus, Streptococcus, Lactobacillus and Lactococcus. These observations provide further evidence that dsDNA phages from diverse bacterial hosts are related and have had access to a common genetic pool. Analysis of the late genes was particularly informative. The sequences of the head assembly proteins (portal, head protease and major capsid) were conserved between straight phiC31, coliphage HK97, staphylococcal phage straight phiPVL, two Rhodobacter capsulatus prophages and two Mycobacterium tuberculosis prophages. These phages and prophages (where non-defective) from evolutionarily diverse hosts are, therefore, likely to share a common head assembly mechanism i.e. that of HK97. The organisation of the tail genes in straight phiC31 is highly reminiscent of tail regions from other phage genomes. The unusual organisation of the putative lysis genes in straight phiC31 is discussed, and speculations are made as to the roles of some inessential early gene products. Similarities between certain phage gene products and eukaryotic dsDNA virus proteins were noted, in particular, the primase/helicases and the terminases (large subunits). Furthermore, the complete sequence clarifies the overall transcription map of the phage during lytic growth and the positions of elements involved in the maintenance of lysogeny.

| S-EPMC148434 | biostudies-other

Genome Sequence of Cluster BI1 Streptomyces griseus Phage TaidaOne.

Project description:Bacteriophage TaidaOne was isolated from soil collected in Taipei, Taiwan, using the host Streptomyces griseus. It is a siphovirus with a 56,183-bp genome that contains 86 protein-coding genes. Based on gene content similarity, it was assigned to actinobacteriophage subcluster BI1, within which only TaidaOne and GirlPower genomes contain an acetyltransferase homolog gene.

| S-EPMC9670994 | biostudies-literature

Complete Genome Sequence of Streptomyces Bacteriophage Abt2graduatex2.

Project description:The Streptomyces bacteriophage Abt2graduatex2 is a double-stranded DNA (dsDNA) Siphoviridae isolated from soil collected in Baltimore, MD, and harvested using Streptomyces griseus subsp. griseus Abt2graduatex2, a cluster BG phage, encodes an HicA-like toxin.

| S-EPMC5773734 | biostudies-literature

Complete Genome Sequence of Streptomyces Siphophage Sitrop.

Project description:Streptomyces sp. strain Mg1 is a Gram-positive soil bacterium capable of causing cell lysis and degradation of Bacillus subtilis colonies. Here, we report the 48,481-bp genome of Streptomyces sp. Mg1 siphophage Sitrop. With 77 predicted protein-coding genes and one tRNA, Sitrop shares 77% nucleotide sequence identity with the Streptomyces phage Verse.

| S-EPMC8407746 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data