BioCommons: a robust Java library for RNA structural bioinformatics.

ABSTRACT:

Motivation

Biomolecular structures come in multiple representations and diverse data formats. Their incompatibility with the requirements of data analysis programs significantly hinders the analytics and the creation of new structure-oriented bioinformatic tools. Therefore, the need for robust libraries of data processing functions is still growing.

Results

BioCommons is an open-source, Java library for structural bioinformatics. It contains many functions working with the 2D and 3D structures of biomolecules, with a particular emphasis on RNA.

Availability

The library is available in Maven Central Repository and its source code is hosted on GitHub: https://github.com/tzok/BioCommons.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Zok T 

PROVIDER: S-EPMC8428578 | biostudies-literature |

REPOSITORIES: biostudies-literature