Unknown

Dataset Information

0

Protocol for multicolor three-dimensional dSTORM data analysis using MATLAB-based script package Grafeo.


ABSTRACT: This protocol describes the step-by-step analysis of the multicolor (one-, two-, or three-color) two- and three-dimensional dSTORM (direct STochastic Optical Reconstruction Microscopy) data using MATLAB-based script package Grafeo. Grafeo primarily uses pointillist data visualization and analysis frameworks, including the nearest neighbors, approach, Voronoi tessellation, Delaunay triangulation, Ripley's (K, L) and two-point correlation functions, and graph-based clustering. For complete details on the use and execution of this protocol, please refer to Peaucelle et al. (2020), Haas et al., 2018, Haas et al. (2020b).

SUBMITTER: Haas KT 

PROVIDER: S-EPMC8437824 | biostudies-literature |

REPOSITORIES: biostudies-literature

Similar Datasets

| S-EPMC6940661 | biostudies-literature
| S-EPMC4908324 | biostudies-literature
| S-EPMC7028321 | biostudies-literature
| S-EPMC3423474 | biostudies-literature
| S-EPMC3134274 | biostudies-literature
| S-EPMC5993819 | biostudies-other
| S-EPMC7733027 | biostudies-literature
| S-EPMC4601020 | biostudies-literature
| S-EPMC6287901 | biostudies-other
| S-EPMC10963655 | biostudies-literature