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Development of a base editor for protein evolution via in situ mutation in vivo.

ABSTRACT: Protein evolution has significantly enhanced the development of life science. However, it is difficult to achieve in vitro evolution of some special proteins because of difficulties with heterologous expression, purification, and function detection. To achieve protein evolution via in situ mutation in vivo, we developed a base editor by fusing nCas with a cytidine deaminase in Bacillus subtilis through genome integration. The base editor introduced a cytidine-to-thymidine mutation of approximately 100% across a 5 nt editable window, which was much higher than those of other base editors. The editable window was expanded to 8 nt by extending the length of sgRNA, and conversion efficiency could be regulated by changing culture conditions, which was suitable for constructing a mutant protein library efficiently in vivo. As proof-of-concept, the Sec-translocase complex and bacitracin-resistance-related protein BceB were successfully evolved in vivo using the base editor. A Sec mutant with 3.6-fold translocation efficiency and the BceB mutants with different sensitivity to bacitracin were obtained. As the construction of the base editor does not rely on any additional or host-dependent factors, such base editors (BEs) may be readily constructed and applicable to a wide range of bacteria for protein evolution via in situ mutation.

SUBMITTER: Hao W

PROVIDER: S-EPMC8450078 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Evolution of an adenine base editor into a small, efficient cytosine base editor with low off-target activity.

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ABE8e adenine base editor precisely and efficiently corrects a COL7A1 nonsense mutation

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Project description:This SuperSeries is composed of the SubSeries listed below.

2023-09-14 | GSE243181 | GEO

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