Dataset Information

Gap Reconstruction in Optical Motion Capture Sequences Using Neural Networks.

ABSTRACT: Optical motion capture is a mature contemporary technique for the acquisition of motion data; alas, it is non-error-free. Due to technical limitations and occlusions of markers, gaps might occur in such recordings. The article reviews various neural network architectures applied to the gap-filling problem in motion capture sequences within the FBM framework providing a representation of body kinematic structure. The results are compared with interpolation and matrix completion methods. We found out that, for longer sequences, simple linear feedforward neural networks can outperform the other, sophisticated architectures, but these outcomes might be affected by the small amount of data availabe for training. We were also able to identify that the acceleration and monotonicity of input sequence are the parameters that have a notable impact on the obtained results.

SUBMITTER: Skurowski P

PROVIDER: S-EPMC8472986 | biostudies-literature | 2021 Sep

REPOSITORIES: biostudies-literature

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Publications

Gap Reconstruction in Optical Motion Capture Sequences Using Neural Networks.

Skurowski Przemysław P Pawlyta Magdalena M

Sensors (Basel, Switzerland) 20210912 18

Optical motion capture is a mature contemporary technique for the acquisition of motion data; alas, it is non-error-free. Due to technical limitations and occlusions of markers, gaps might occur in such recordings. The article reviews various neural network architectures applied to the gap-filling problem in motion capture sequences within the FBM framework providing a representation of body kinematic structure. The results are compared with interpolation and matrix completion methods. We found ...[more]

PMID: 34577321

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Project description:Marker-based Optical Motion Capture (OMC) systems and associated musculoskeletal (MSK) modelling predictions offer non-invasively obtainable insights into muscle and joint loading at an in vivo level, aiding clinical decision-making. However, an OMC system is lab-based, expensive, and requires a line of sight. Inertial Motion Capture (IMC) techniques are widely-used alternatives, which are portable, user-friendly, and relatively low-cost, although with lesser accuracy. Irrespective of the choice of motion capture technique, one typically uses an MSK model to obtain the kinematic and kinetic outputs, which is a computationally expensive tool increasingly well approximated by machine learning (ML) methods. Here, an ML approach is presented that maps experimentally recorded IMC input data to the human upper-extremity MSK model outputs computed from ('gold standard') OMC input data. Essentially, this proof-of-concept study aims to predict higher-quality MSK outputs from the much easier-to-obtain IMC data. We use OMC and IMC data simultaneously collected for the same subjects to train different ML architectures that predict OMC-driven MSK outputs from IMC measurements. In particular, we employed various neural network (NN) architectures, such as Feed-Forward Neural Networks (FFNNs) and Recurrent Neural Networks (RNNs) (vanilla, Long Short-Term Memory, and Gated Recurrent Unit) and a comprehensive search for the best-fit model in the hyperparameters space in both subject-exposed (SE) as well as subject-naive (SN) settings. We observed a comparable performance for both FFNN and RNN models, which have a high degree of agreement (ravg,SE,FFNN=0.90±0.19, ravg,SE,RNN=0.89±0.17, ravg,SN,FFNN=0.84±0.23, and ravg,SN,RNN=0.78±0.23) with the desired OMC-driven MSK estimates for held-out test data. The findings demonstrate that mapping IMC inputs to OMC-driven MSK outputs using ML models could be instrumental in transitioning MSK modelling from 'lab to field'.

Project description:Motion capture of unrestrained moving animals is a major analytic tool in neuroethology and behavioral physiology. At present, several motion capture methodologies have been developed, all of which have particular limitations regarding experimental application. Whereas marker-based motion capture systems are very robust and easily adjusted to suit different setups, tracked species, or body parts, they cannot be applied in experimental situations where markers obstruct the natural behavior (e.g., when tracking delicate, elastic, and/or sensitive body structures). On the other hand, marker-less motion capture systems typically require setup- and animal-specific adjustments, for example by means of tailored image processing, decision heuristics, and/or machine learning of specific sample data. Among the latter, deep-learning approaches have become very popular because of their applicability to virtually any sample of video data. Nevertheless, concise evaluation of their training requirements has rarely been done, particularly with regard to the transfer of trained networks from one application to another. To address this issue, the present study uses insect locomotion as a showcase example for systematic evaluation of variation and augmentation of the training data. For that, we use artificially generated video sequences with known combinations of observed, real animal postures and randomized body position, orientation, and size. Moreover, we evaluate the generalization ability of networks that have been pre-trained on synthetic videos to video recordings of real walking insects, and estimate the benefit in terms of reduced requirement for manual annotation. We show that tracking performance is affected only little by scaling factors ranging from 0.5 to 1.5. As expected from convolutional networks, the translation of the animal has no effect. On the other hand, we show that sufficient variation of rotation in the training data is essential for performance, and make concise suggestions about how much variation is required. Our results on transfer from synthetic to real videos show that pre-training reduces the amount of necessary manual annotation by about 50%.

Dataset Information

Gap Reconstruction in Optical Motion Capture Sequences Using Neural Networks.

Publications

Gap Reconstruction in Optical Motion Capture Sequences Using Neural Networks.

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