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Claims-based algorithms for common chronic conditions were efficiently constructed using machine learning methods.

ABSTRACT: Identification of medical conditions using claims data is generally conducted with algorithms based on subject-matter knowledge. However, these claims-based algorithms (CBAs) are highly dependent on the knowledge level and not necessarily optimized for target conditions. We investigated whether machine learning methods can supplement researchers' knowledge of target conditions in building CBAs. Retrospective cohort study using a claims database combined with annual health check-up results of employees' health insurance programs for fiscal year 2016-17 in Japan (study population for hypertension, N = 631,289; diabetes, N = 152,368; dyslipidemia, N = 614,434). We constructed CBAs with logistic regression, k-nearest neighbor, support vector machine, penalized logistic regression, tree-based model, and neural network for identifying patients with three common chronic conditions: hypertension, diabetes, and dyslipidemia. We then compared their association measures using a completely hold-out test set (25% of the study population). Among the test cohorts of 157,822, 38,092, and 153,608 enrollees for hypertension, diabetes, and dyslipidemia, 25.4%, 8.4%, and 38.7% of them had a diagnosis of the corresponding condition. The areas under the receiver operating characteristic curve (AUCs) of the logistic regression with/without subject-matter knowledge about the target condition were .923/.921 for hypertension, .957/.938 for diabetes, and .739/.747 for dyslipidemia. The logistic lasso, logistic elastic-net, and tree-based methods yielded AUCs comparable to those of the logistic regression with subject-matter knowledge: .923-.931 for hypertension; .958-.966 for diabetes; .747-.773 for dyslipidemia. We found that machine learning methods can attain AUCs comparable to the conventional knowledge-based method in building CBAs.

SUBMITTER: Hara K

PROVIDER: S-EPMC8476042 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:Chronic diseases represent a serious threat to public health across the world. It is estimated at about 60% of all deaths worldwide and approximately 43% of the global burden of chronic diseases. Thus, the analysis of the healthcare data has helped health officials, patients, and healthcare communities to perform early detection for those diseases. Extracting the patterns from healthcare data has helped the healthcare communities to obtain complete medical data for the purpose of diagnosis. The objective of the present research work is presented to improve the surveillance detection system for chronic diseases, which is used for the protection of people's lives. For this purpose, the proposed system has been developed to enhance the detection of chronic disease by using machine learning algorithms. The standard data related to chronic diseases have been collected from various worldwide resources. In healthcare data, special chronic diseases include ambiguous objects of the class. Therefore, the presence of ambiguous objects shows the availability of traits involving two or more classes, which reduces the accuracy of the machine learning algorithms. The novelty of the current research work lies in the assumption that demonstrates the noncrisp Rough K-means (RKM) clustering for figuring out the ambiguity in chronic disease dataset to improve the performance of the system. The RKM algorithm has clustered data into two sets, namely, the upper approximation and lower approximation. The objects belonging to the upper approximation are favourable objects, whereas the ones belonging to the lower approximation are excluded and identified as ambiguous. These ambiguous objects have been excluded to improve the machine learning algorithms. The machine learning algorithms, namely, naïve Bayes (NB), support vector machine (SVM), K-nearest neighbors (KNN), and random forest tree, are presented and compared. The chronic disease data are obtained from the machine learning repository and Kaggle to test and evaluate the proposed model. The experimental results demonstrate that the proposed system is successfully employed for the diagnosis of chronic diseases. The proposed model achieved the best results with naive Bayes with RKM for the classification of diabetic disease (80.55%), whereas SVM with RKM for the classification of kidney disease achieved 100% and SVM with RKM for the classification of cancer disease achieved 97.53 with respect to accuracy metric. The performance measures, such as accuracy, sensitivity, specificity, precision, and F-score, are employed to evaluate the performance of the proposed system. Furthermore, evaluation and comparison of the proposed system with the existing machine learning algorithms are presented. Finally, the proposed system has enhanced the performance of machine learning algorithms.

Project description:Background Chronic lymphocytic leukemia (CLL) is the most common type of leukemia in adults. Thus, novel reliable biomarkers need to be further explored to increase diagnostic, therapeutic, and prognostic effectiveness. Methods Six datasets containing CLL and control samples were downloaded from the Gene Expression Omnibus database. Differential gene expression analysis, weighted gene coexpression network analysis (WGCNA), and the least absolute shrinkage and selection operator (LASSO) regression were applied to identify potential diagnostic biomarkers for CLL using R software. The diagnostic performance of the hub genes was then measured by the receiver operating characteristic (ROC) curve analysis. Functional analysis was implemented to uncover the underlying mechanisms. Additionally, correlation analysis was performed to assess the relationship between the hub genes and immunity characteristics. Results A total number of 47 differentially expressed genes (DEGs) and 25 candidate hub genes were extracted through differential gene expression analysis and WGCNA, respectively. Based on the 14 overlapped genes between the DEGs and the candidate hub genes, LASSO regression analysis was used, which identified a final number of six hub genes as potential biomarkers for CLL: ABCA6, CCDC88A, PMEPA1, EBF1, FILIP1L, and TEAD2. The ROC curves of the six genes showed reliable predictive ability in the training and validation cohorts, with all area under the curve (AUC) values over 0.80. Functional analysis revealed an abnormal immune status in the CLL patients. A significant correlation was found between the hub genes and the immune-related pathways, indicating a possible tight connection between the hub genes and tumor immunity in CLL. Conclusion This study was based on machine learning algorithms, and we identified six genes that could be possible CLL markers, which may be involved in CLL pathogenesis and progression through immune-related signal pathways.

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Claims-based algorithms for common chronic conditions were efficiently constructed using machine learning methods.

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