Browse
Submit Data
Databases
API
Help

Dataset Information

28 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Plagiopholis styani (Reptilia: Squamata: Colubridae).

ABSTRACT: In this study, the complete mitochondrial genome of Plagiopholis styani was acquired and described. The mitogenome is a circular molecule of 19,669 base pairs (bp) in length including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two control regions (D-loop), which is similar to other Colubridae snakes. The total base composition of mitochondrial DNA is A 33.0%, C 24.9%, G 12.8%, and T 29.3%. The mitochondrial genome of Plagiopholis styani contributes to revealing the phylogenetic relationships among species of the Colubridae family.

SUBMITTER: Fu C

PROVIDER: S-EPMC8477961 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Sequencing and analysis of mitochondrial genome of Elaphe carinata (Reptilia, Squamata, Colubridae).

Project description:The complete mitochondrial genome of Elaphe carinata was sequenced and analysed using muscle tissue for the first time. The genome is 17 154 bp in length. The complete mitochondrial genome contains 22 tRNA genes, 13 protein-coding genes (PCGs), two rRNA genes, two control regions (CRI and CRII) and one putative origin of L-strand replication. The gene order and nucleotide composition of E. carinata are very similar with E. davidi, E. schrenckii, E. anomala and E. bimaculata. A phylogenetic tree of mitochondrial genomes analyses of 16 species snakes of Colubridae was made based on the Neighbour-Joining (NJ) method, E. carinata has the most closely relationship with E. davidi, while E. poryphyracea and Euprepiophis perlacea are special species.

| S-EPMC7800545 | biostudies-literature

The complete mitochondrial genome of Lycodon liuchengchaoi (squamata: colubridae).

Project description:Lycodon liuchengchaoi is a new species discovered in recent years which is widely distribute in Anhui, Hubei and Sichuan Province. In this study, we determined the complete mitochondrial genome of L. liuchengchaoi. The result shows that the complete mitogenome of L. liuchengchaoi is 17,171bp. It is similar with the typical mtDNA of Serpentes, which contains 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, 2 control regions, and a stem-loop region. The phylogenetic tree, contains 17 Serpentiforms species, is divided into two clades which correspond to six genera in Colubridae. The L. liuchengchaoi which appeared into Clade A, clustered within Lycodon.

| S-EPMC7875199 | biostudies-literature

Complete mitochondrial genomes of Boigakraepelini and Hebiuscraspedogaster (Reptilia, Squamata, Colubridae) and their phylogenetic implications.

Project description:The complete sequence of the mitochondrial genome is a powerful tool for studying phylogenetic relationships and molecular evolution in various species. In this work, the mitogenomes of Boigakraepelini and Hebiuscraspedogaster were sequenced and characterized for the first time. The lengths of the B.kraepelini and H.craspedogaster mitogenomes were 17,124 bp and 17,120 bp, respectively, and both included 13 protein-coding genes, 22 tRNAs, two rRNAs and two control regions. The arrangements of these mitochondrial genes were the same in B.kraepelini and H.craspedogaster. In addition, both genome compositions showed A+T bias (59.03%, 60.93%) and had positive AT skews (0.179, 0.117) and negative GC skews (-0.397, -0.348). The phylogenetic results illustrated a close relationship between B.kraepelini and the genus Lycodon. Moreover, H.craspedogaster was clustered with other Hebius snakes and closely related to other Natricinae species. These results will provide references for further research on the phylogeny of Colubridae.

| S-EPMC9836618 | biostudies-literature

The complete mitochondrial genome of the Opisthotropis guangxiensis (Squamata: Colubridae).

Project description:In this study, we report the complete mitochondrial genome of the Opisthotropis guangxiensis, which is 17,042 bp in size and includes 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 2 non-coding regions. The sequence presented would be useful for better understanding the phylogenetic and evolutionary of genus Opisthotropis.

| S-EPMC7782143 | biostudies-literature

The complete mitochondrial genome of Iphisa elegans (Reptilia: Squamata: Gymnophthalmidae).

Project description:The complete mitogenome of the lizard Iphisa elegans Gray, 1851 was sequenced using a shotgun approach on an Illumina HiSeq 3000 platform, providing the first mitogenome for Gymnophthalmidae. The genome was 18,622 bp long, with 13 protein-coding genes, two rRNA (12S and 16S), and 22 tRNA, as well as the control region. A maximum likelihood phylogenetic analysis including I. elegans and all other available mitogenomes of Squamata provided a tree in accordance with previous phylogenetic relationships inferred for Squamata.

| S-EPMC7782234 | biostudies-literature

Complete mitochondrial genome of the Xianggelila Hot-spring snake, Thermophis shangrila (Reptilia, Colubridae).

Project description:The Xianggelila hot-spring snake, Thermophis shangrila (Reptilia, Colubridae), is a species of family Colubridae, which is seen only in Shangri-La, Northern Yunnan, China. Herein, the complete mitochondrial genome of this species has been reported. The total length of the genome was 17,327 bp, and composed of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 2 control regions. The total base composition was 32.7% for A, 23.7% for T, 13.5% for G and 32.7% for C. The phylogenetic tree with 13 protein-coding genes of T. shangrila together with 12 other closely related species belonging to the family Colubridae was reconstructed.

| S-EPMC7800787 | biostudies-literature

The complete mitochondrial genome of Pseudoxenodon stejnegeri (Squamata: Colubridae: Pseudoxenodontinae) and its phylogeny.

Project description:The mitochondrial genome sequence of Pseudoxenodon stejnegeri (Squamata: Colubridae: Pseudoxenodontinae) from Taishun County, Zhejiang Province, China, which is 18,475 bp in length and contains 25 tRNAs (including extra two tRNA-Tyr genes and extra one tRNA-Met gene), two rRNAs, 13 protein-coding genes and two identical control regions. The overall AT content of the mitogenome is 59.6% (A = 32.6%, T = 27%, C = 27%, G = 13.4%). In BI and ML phylogenetic analyses, the monophyly of the family Colubridae was well supported and P. stejnegeri was a basal clade of Colubridae.

| S-EPMC7671704 | biostudies-literature

The complete mitochondrial genome of Eremias yarkandensis (Reptilia, Squamata, Lacertidae) from Kyrgyzstan.

Project description:The Yarkand racerunner, Eremias yarkandensis Blandford, 1875, is only distributed in China and Kyrgyzstan. Its complete mitogenome was determined by next-generation sequencing for the first time. The mitogenome was 18,743 bp in length, including 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. Its gene arrangement was similar to the typical mtDNA of vertebrates. The 13 concatenated PCGs were used to perform Bayesian phylogenetic analyses together with several congeners as well as two representative species of Lacerta with mitogenome data in GenBank. The resulting phylogenetic tree recovered the monophyly of both Eremias and its viviparous group, with E. yarkandensis being more closely related to E. przewalskii than to E. dzungarica. The mitogenome of E. yarkandensis will provide fundamental data for the exploration of the mitogenome evolution in racerunners.

| S-EPMC8896179 | biostudies-literature

The complete mitochondrial genome of the greater green snake Cyclophiops major (Reptilia, Serpentes, Colubridae).

Project description:The greater green snake Cyclophiops major is a protected and colubrid species. Here, we investigated the complete mitochondrial genome of C. major. The genome is 17,217bp in size, including 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, 2 control regions, and an origin of light-strand replication. All genes are distributed on the heavy strand, except for ND6 gene and 8 tRNA genes. The AT content of the overall base composition of light strand is 59.83%, showing AT bias. Phylogenetic tree was built based on the genome of C. major and other related snakes to analyze their phylogenic relationship.

| S-EPMC7799836 | biostudies-literature

The complete mitochondrial genome of the Xizang hot-spring snake, Thermophis baileyi Wall, 1907 (Reptilia, colubridae).

Project description:The Xizang hot-spring snake, Thermophis baileyi (Reptilia, Colubridae), is a relict species of the family Colubridae, which is known only from Tibet, China. In this study, we report the complete mitochondrial genome of this species. The total length of the genome is 17,385 bp, and comprises 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 2 control regions. The total base composition is 32.5% for A, 23.8% for T, 13.5% for G, and 30.2% for C. The phylogenetic tree with 13 protein-coding genes (PCGs) of T. baileyi together with 12 other closely related species belonging to the family Colubridae was built, in order to prove the validity of the mitogenome of T. baileyi.

| S-EPMC7800217 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data