Dataset Information

BigDataProcessor2: A free and open-source Fiji plugin for inspection and processing of TB sized image data.

ABSTRACT:

Summary

Modern bioimaging and related areas such as sensor technology have undergone tremendous development over the last few years. As a result, contemporary imaging techniques, particularly electron microscopy (EM) and light sheet microscopy, can frequently generate datasets attaining sizes of several terabytes (TB). As a consequence, even seemingly simple data operations such as cropping, chromatic- and drift-corrections and even visualisation, poses challenges when applied to thousands of time points or tiles. To address this we developed BigDataProcessor2-a Fiji plugin facilitating processing workflows for TB sized image datasets.

Availability and implementation

BigDataProcessor2 is available as a Fiji plugin via the BigDataProcessor update site. The application is implemented in Java and the code is publicly available on GitHub (https://github.com/bigdataprocessor/bigdataprocessor2).

SUBMITTER: Tischer C

PROVIDER: S-EPMC8479660 | biostudies-literature | 2021 Feb

REPOSITORIES: biostudies-literature

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Publications

BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data.

Tischer Christian C Ravindran Ashis A Reither Sabine S Chiaruttini Nicolas N Pepperkok Rainer R Norlin Nils N

Bioinformatics (Oxford, England) 20210901 18

<h4>Summary</h4>Modern bioimaging and related areas such as sensor technology have undergone tremendous development over the last few years. As a result, contemporary imaging techniques, particularly electron microscopy (EM) and light sheet microscopy, can frequently generate datasets attaining sizes of several terabytes (TB). As a consequence, even seemingly simple data operations such as cropping, chromatic- and drift-corrections and even visualisation, poses challenges when applied to thousan ...[more]

PMID: 33594413

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