The soil microbiomics of intact, degraded and partially-restored semi-arid succulent thicket (Albany Subtropical Thicket)
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ABSTRACT:
SUBMITTER: Schagen M
PROVIDER: S-EPMC8501999 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Drought prone, arid and semi-arid ecosystems are challenging to restore once degraded due to low levels of natural recruitment and survival of reintroduced plants. This is evident in the restoration of degraded succulent thicket habitats in the Albany Subtropical Thicket Biome located in South Africa. The current restoration practice for this ecosystem focuses predominantly on reintroducing Portulacaria afra L. Jacq., which is naturally dominant in terms of cover and biomass, but largely absent in regions degraded by domestic livestock. This has been achieved by planting unrooted cuttings with limited consideration of soil water availability in a drought-prone ecosystem. This study tests the effects of the timing of water availability after planting on the root development of P. afra cuttings. Cuttings were harvested from seven individual plants and grown in a glasshouse setting. Eighty four cuttings were taken from each individual, twelve for each of the seven watering treatments per individual plant. The treatments represented a time-staggered initial watering after planting, including: on the day of planting, 4 days, 7 days, 14 days, 21 days, and 28 days after planting. After 32 days, all treatments were watered on a bi-weekly basis for two weeks; a control treatment with no watering throughout the experiment was included. The proportion of rooted cuttings per treatment and dry root mass were determined at the end of the experimental period (day 42). The early onset of watering was associated with a higher percentage of rooting (X2(5) = 11.352, p = 0.045) and had a weak, but non-significant, impact on the final dry root mass (F5,36 = 2.109, p = 0.0631). Importantly, no clear rooting window within 28 days was detected as the majority of cuttings exhibited root development (greater than 50% of cuttings rooted for each individual parent-plant); this suggests that watering at the time of planting P. afra cuttings in-field for restoration may not be necessary. An unexpected, but important, result was that parent-plant identity had a strong interaction with the accumulation of root mass (F36,460 = 5.026, p < 0.001; LR7 = 122.99, p < 0.001). The control treatment, which had no water throughout the experiment, had no root development. These findings suggest that water availability is required for the onset of rooting in P. afra cutting. However, the duration of the experiment was insufficient to detect the point at which P. afra cuttings could no longer initiate rooting once exposed to soil moisture, and thus no rooting window could be defined. Despite harvesting material from the same source population, parent-plant identity strongly impacted root development. Further work is required to characterise the rooting window, and to explore the effect of parent-plant condition on in-field and experimental restoration results; we urge that experiments using P. afra closely track the parent-source at the individual level as this may be a factor that may have a major impact on results.
| S-EPMC10437031 | biostudies-literature
Project description:Restoration of degraded subtropical succulent thicket, via the planting of Portulacaria afra (spekboom) truncheons, is the focus of a public works programme funded by the South African government. The goals of the programme, which started in 2004, are to create jobs, sequester carbon, restore biodiversity, reduce erosion, improve soil water holding capacity and catalyse private sector investment for upscaling of restoration. Here we report on a region-wide experiment to identify factors that can improve project success. Measures of success were survivorship and annual aboveground biomass carbon sequestration (ABCsr) of spekboom truncheons some 33-57 months after planting-starting in March 2008-into 173 fenced plots (0.25 ha) located throughout the global extent of spekboom thicket vegetation. We also collected data for 18 explanatory variables under the control of managers, and an additional 39 variables reflecting soil physical and chemical characteristics and rainfall patterns post restoration, all beyond the influence of managers. Since the latter covariates were available for only 83 plots, we analysed the two data sets separately. We used a prediction rule ensemble to determine the most important predictors of restoration success. There was great variation in percentage survivorship (median = 24, range = 0-100%) and ABCsr (median = 0.009, range = 0-0.38 t C ha-1 yr-1). The model using management variables explained less variance (53%) in survivorship than the model incorporating additional soil and rainfall covariates (62%). ABCsr models were better fits (78 and 88% variance explained, respectively). All model configurations identified browse intensity as a highly influential predictor of restoration success. Predicted success was highest for plots located in target habitat; however, only 45% were thus located, suggesting the need for expert input and habitat modelling for improving target habitat identification. Frost exposure was another important predictor influencing all models but was likely a consequence of locating sites off target habitat. Sites planted on equatorward slopes during the warm season showed reduced carbon sequestration, possibly due to elevated soil moisture stress associated with high radiation loads. Physiographic factors associated with improved restoration success were location on sloping ground (reduced frost exposure), increasing longitude (more warm-season rainfall) and increasing latitude (less frost coastwards). Few trends were evident among post-restoration climatic factors beyond the control of managers. Higher rainfall during the year post restoration had a negative impact on carbon sequestration while higher rain during the early months post restoration had a positive effect on both carbon sequestration and survivorship. Soil factors showed little importance for the survivorship model, whereas silt content, % K and Mg CEC emerged as predictors of carbon sequestration. Our results have direct relevance for improving the success of landscape-scale restoration projects envisioned for the ca. 8,930 km2 of degraded spekboom thicket.
| S-EPMC8364318 | biostudies-literature
Project description:Enduring deficits in temporal processing can be induced in the auditory cortex by rearing infant rats in the presence of low frequency-modulated noises. We found that it was possible to restore normal temporal processing, overcoming deficits induced during the critical period, by intensively training developmentally impaired animals as juveniles or young adults. Re-normalized cortical temporal response characteristics were sustained long after training cessation.
| S-EPMC2709597 | biostudies-literature
Project description:Insights from biome-wide experiments can improve efficacy of landscape-scale ecological restoration projects. Such insights enable implementers to set temporal and geographical benchmarks and to identify key drivers of success during the often decades-long restoration trajectory. Here we report on a biome-wide experiment aimed at informing the ecological restoration of thousands of hectares of degraded subtropical thicket dominated by the succulent shrub, Portulacaria afra (spekboom). Restoration using spekboom truncheons has the potential to sequester, for a semi-arid region, large amounts of ecosystem carbon, while regenerating a host of associated ecosystem services. This study evaluates, after about three years post-propagation, the effects of spekboom truncheon size and treatment on survivorship in 40 fence-enclosed (0.25 ha) plots located in target habitat across the entire spekboom thicket biome. In each plot, locally harvested spekboom truncheons, comprising eight size/treatment combinations, were planted in replicated rows of between 24 and 49 individuals, depending on treatment. The experiment assessed the role of truncheon size, spacing, application of rooting hormone and watering at planting on survivorship percentage as an indicator of restoration success. All eight combinations recorded extreme minimum survivorship values of zero, while the range of extreme maximum values was 70-100%. Larger truncheons (>22.5 mm diameter) had almost double the survivorship (ca. 45%) than smaller truncheons (< 15 mm) (ca. 25%). Planting large, untreated truncheons at 1 m intervals-as opposed to 2 m intervals recommended in the current restoration protocol-resulted in no significant change in survivorship. The application of rooting hormone and water at planting had no significant effect on restoration success for both large and small truncheons. While our results do not provide an evidence base for changing the current spekboom planting protocol, we recommend research on the financial and economic costs and benefits of different propagation strategies in real-world contexts.
| S-EPMC8061913 | biostudies-literature
Project description:It has been hypothesised that high-intensity fires prevent fire-dependent fynbos from being replaced by fire-avoiding subtropical thicket on dune landscapes of the Cape Floristic Region (CFR). Recent extensive fires provided an opportunity to test this hypothesis. We posit that (1) fire-related thicket shrub mortality would be size dependent, with smaller individuals suffering higher mortality than larger ones; and (2) that survival and resprouting vigour of thicket shrubs would be negatively correlated with fire severity. We assessed survival and resprouting vigour post-fire in relation to fire severity and pre-fire shrub size at two dune landscapes in the CFR. Fire severity was scored at the base of the shrub and categorised into four levels. Pre-fire size was quantified as an index of lignotuber diameter and stem count of each shrub. Resprouting vigour consisted of two variables; resprouting shoot count and resprouting canopy volume. A total of 29 species were surveyed. Post-fire survival of thicket was high (83-85%). We found that smaller shrubs did have a lower probability of post-fire survival than larger individuals but could detect no consistent relationship between shrub mortality and fire severity. Fire severity had a positive effect on resprouting shoot count but a variable effect on resprouting volume. Pre-fire size was positively related to survival and both measures of resprouting vigour. We conclude that thicket is resilient to high-severity fires but may be vulnerable to frequent fires. Prescribed high-intensity fires in dune landscapes are unlikely to reduce the extent of thicket and promote fynbos expansion.
| S-EPMC7293192 | biostudies-literature
Project description:Peanut (Arachis hypogea L.) is an important nut crop extensively grown in rainfed regions of Pakistan. The crop requires low inputs; thus, could grow successfully under diverse environmental conditions. Due to pegging ability, peanut grows aggressively in sandy and sandy-loam soils. However, it has not introduced to Thal region of southern Punjab, Pakistan. A two-year field experiment was conducted to optimize sowing dates for two peanut genotypes ('BARI-2016' and 'NO-334') in Thal region (Layyah). Similarly, a yield trial was conducted at Chakwal where both genotypes are extensively grown. Five sowing dates (10th April, 1st May, 20th May, 10th June and 30th June) were included in the study. The highest seed yield was obtained with early sown crop (10th April) during both years. Pod formation reduced with increasing atmospheric temperature and no pods were formed on the plants sown on 30th June. Decreased pod formation seemed a major reason for low yield in late-sown crop. The highest yield was observed for the crop sown on 10th April, which was decreased by 40% for the crop sown on 1st May. Genotype 'BARI-2016' performed better for seed yield at both locations compared with 'NO-334'. The results suggested that genotype 'BARI-2016' is more adaptive to arid and semi-arid condition under rainfed or irrigated conditions. Sowing peanut at optimum time would increase seed yield in arid and semi-arid regions. Nonetheless, 'BARI-2016' can be grown under rainfed and irrigated conditions successfully.
| S-EPMC8192014 | biostudies-literature
Project description:Restoration of subtropical thicket in South Africa using the plant Portulacaria afra (an ecosystem engineer) has been hampered, in part, by selecting sites that are frost prone-this species is intolerant of frost. Identifying parts of the landscape that are exposed to frost is often challenging. Our aim is to calibrate an existing cold-air pooling (CAP) model to predict where frost is likely to occur in the valleys along the sub-escarpment lowlands (of South Africa) where thicket is dominant. We calibrated this model using two valleys that have been monitored during frost events. To test the calibrated CAP model, model predictions of frost-occurrence for six additional valleys were assessed using a qualitative visual comparison of existing treelines in six valleys-we observe a strong visual match between the predicted frost and frost-free zones with the subtropical thicket (frost-intolerant) and Nama-Karoo shrubland (frost-tolerant) treelines. In addition, we tested the model output using previously established transplant experiments; ∼300 plots planted with P. afra (known as the Thicket-Wide Plots) were established across the landscape-without consideration of frost-to assess the potential factors influencing the survival and growth of P. afra. Here we use a filtered subset of these plots (n = 70), and find that net primary production of P. afra was significantly lower in plots that the model predicted to be within the frost zone. We suggest using this calibrated CAP model as part of the site selection process when restoring subtropical thicket in sites that lie within valleys-avoiding frost zones will greatly increase the likelihood of restoration success.
| S-EPMC7183751 | biostudies-literature
Project description:Harsh habitats dominated by invasive species are difficult to restore. Invasive grasses in arid environments slow succession toward more desired composition, yet grass removal exacerbates high light and temperature, making the use of "nurse plants" an appealing strategy. In this study of degraded subtropical woodlands dominated by alien grasses in Hawai'i, we evaluated whether individuals of two native (Dodonaea viscosa, Leptocophylla tameiameia) and one non-native (Morella faya) woody species (1) act as natural nodes of recruitment for native woody species and (2) can be used to enhance survivorship of outplanted native woody species. To address these questions, we quantified the presence and persistence of seedlings naturally recruiting beneath adult nurse shrubs and compared survival and growth of experimentally outplanted seedlings of seven native woody species under the nurse species compared to intact and cleared alien-grass plots. We found that the two native nurse shrubs recruit their own offspring, but do not act as establishment nodes for other species. Morella faya recruited even fewer seedlings than native shrubs. Thus, outplanting will be necessary to increase abundance and diversity of native woody species. Outplant survival was the highest under shrubs compared to away from them with few differences between nurse species. The worst habitat for native seedling survival and growth was within the unmanaged invasive grass matrix. Although the two native nurse species did not differentially affect outplant survival, D. viscosa is the most widespread and easily propagated and is thus more likely to be useful as an initial nurse species. The outplanted species showed variable responses to nurse habitats that we attribute to resource requirements resulting from their typical successional stage and nitrogen fixation capability.
| S-EPMC4314263 | biostudies-literature
Project description:Efficient trafficking of the cystic fibrosis transmembrane conductance regulator (CFTR) to and from the cell surface is essential for maintaining channel density at the plasma membrane (PM) and ensuring proper physiological activity. The most common mutation, F508del, exhibits reduced surface expression and impaired function despite treatment with currently available pharmacological small molecules, called correctors. To gain more detailed insight into whether CFTR enters compartments that allow corrector stabilization in the cell periphery, we investigated the peripheral trafficking itineraries and kinetics of wild type (WT) and F508del in living cells using high-speed fluorescence microscopy together with fluorogen activating protein detection. We directly visualized internalization and accumulation of CFTR WT from the PM to a perinuclear compartment that colocalized with the endosomal recycling compartment (ERC) markers Rab11 and EHD1, reaching steady-state distribution by 25 minutes. Stimulation by protein kinase A (PKA) depleted this intracellular pool and redistributed CFTR channels to the cell surface, elicited by reduced endocytosis and active translocation to the PM. Corrector or temperature rescue of F508del also resulted in targeting to the ERC and exhibited subsequent PKA-stimulated trafficking to the PM. Corrector treatment (24 hours) led to persistent residence of F508del in the ERC, while thermally destabilized F508del was targeted to lysosomal compartments by 3 hours. Acute addition of individual correctors, C4 or C18, acted on peripheral trafficking steps to partially block lysosomal targeting of thermally destabilized F508del. Taken together, corrector treatment redirects F508del trafficking from a degradative pathway to a regulated recycling route, and proteins that mediate this process become potential targets for improving the efficacy of current and future correctors.
| S-EPMC3687701 | biostudies-literature
Project description:Resilience is an important aspect of the non-linear restoration of disturbed ecosystems. Fenced grassland patches on the northern Tibetan Plateau can be used to examine the resistance and resilience of degraded alpine grasslands to grazing and to a changing climate. To examine the non-linearity of restoration, we used moderate resolution imaging spectroradiometer (MODIS) normalized difference vegetation index (NDVI) as a proxy for productivity during a ten-year restoration by fencing. Degraded alpine grasslands exhibited three restoration trajectories: an equilibrium in meadows, a non-linear increase across steppes, and an abrupt impulse in desert-steppes following a slight increase in productivity. Combined with weather conditions, the ten-year grazing exclusion has successfully enhanced the NDVI on the most degraded steppes, but did not do so efficiently on either meadows or desert-steppes. Warming favors the NDVI enhancement of degraded meadows, but higher temperatures limited the restoration of degraded steppes and desert-steppes. Precipitation is necessary to restore degraded alpine grasslands, but more precipitation might be useless for meadows due to lower temperatures and for desert-steppes due to limitations caused by the small species pool. We suggest that detailed field observations of community compositional changes are necessary to better understand the mechanisms behind such non-linear ecological restorations.
| S-EPMC5680212 | biostudies-literature