Browse
Submit Data
Databases
API
Help

Dataset Information

17 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The Influence of Above-Ground Herbivory on the Response of Arctic Soil Methanotrophs to Increasing CH₄ Concentrations and Temperatures.

ABSTRACT: Rising temperatures in the Arctic affect soil microorganisms, herbivores, and peatland vegetation, thus directly and indirectly influencing microbial CH₄ production. It is not currently known how methanotrophs in Arctic peat respond to combined changes in temperature, CH₄ concentration, and vegetation. We studied methanotroph responses to temperature and CH₄ concentration in peat exposed to herbivory and protected by exclosures. The methanotroph activity was assessed by CH₄ oxidation rate measurements using peat soil microcosms and a pure culture of Methylobacter tundripaludum SV96, qPCR, and sequencing of pmoA transcripts. Elevated CH₄ concentrations led to higher CH₄ oxidation rates both in grazed and exclosed peat soils, but the strongest response was observed in grazed peat soils. Furthermore, the relative transcriptional activities of different methanotroph community members were affected by the CH₄ concentrations. While transcriptional responses to low CH₄ concentrations were more prevalent in grazed peat soils, responses to high CH₄ concentrations were more prevalent in exclosed peat soils. We observed no significant methanotroph responses to increasing temperatures. We conclude that methanotroph communities in these peat soils respond to changes in the CH₄ concentration depending on their previous exposure to grazing. This "conditioning" influences which strains will thrive and, therefore, determines the function of the methanotroph community.

SUBMITTER: Rainer EM

PROVIDER: S-EPMC8540837 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Correction: Rainer et al. The Influence of Above-Ground Herbivory on the Response of Arctic Soil Methanotrophs to Increasing CH4 Concentrations and Temperatures. Microorganisms 2021, 9, 2080.

Project description:The authors wish to make the following corrections to this paper [...].

| S-EPMC8703451 | biostudies-literature

Below-ground herbivory mitigates biomass loss from above-ground herbivory of nitrogen fertilized plants.

Project description:Herbivorous insects can influence grassland ecosystem functions in several ways, notably by altering primary production and nutrient turnover. Interactions between above- and belowground herbivory could affect these functions; an effect that might be modified by nitrogen (N) addition, an important global change driver. To explore this, we added above- (grasshoppers) and belowground (wireworms) insect herbivores and N into enclosed, equally composed, grassland plant communities in a fully factorial field experiment. N addition substantially altered the impact of above- and belowground herbivory on ecosystem functioning. Herbivory and N interacted such that biomass was reduced under above ground herbivory and high N input, while plant biomass remained stable under simultaneous above- and belowground herbivory. Aboveground herbivory lowered nutrient turnover rate in the soil, while belowground herbivory mitigated the effect of aboveground herbivory. Soil decomposition potential and N mineralization rate were faster under belowground herbivory at ambient N, but at elevated N this effect was only observed when aboveground herbivores were also present. We found that N addition does not only influence productivity directly (repeatedly shown by others), but also appears to influence productivity by herbivory mediated effects on nutrient dynamics, which highlights the importance of a better understanding of complex biotic interactions.

| S-EPMC7391681 | biostudies-literature

Altered above- and below-ground temperatures (30 day old potato)

Project description:72 plants have been grown in 2 phytochambers for 30 days under control temperature (21Â°C/19Â°C) and short day conditions (8 hours light/16 hours darkness). After 30 days the plants were switched to long day conditions (16 hours light/8 hours darkness) and the temperature of one phytochamber was increased to 29Â°C/27Â° (heat chamber). Moreover,a heatplate was located in the control chamber and a coldplate was located in the heat chamber. 18 plants have been grown on the heatplate with a constant temperature of 29Â°C. 18 plants have been grown on the coldplate with a constant temperature of 22Â°C. After 9 days of the heat period leaf samples (end of night) were taken for micorarray analysis. After 10 days of heat, tuber samples were taken for microarray analysis.

2016-12-12 | E-MTAB-4808 | biostudies-arrayexpress

Methanotroph populations and CH4 oxidation potentials in high-Arctic peat are altered by herbivory induced vegetation change.

Project description:Methane oxidizing bacteria (methanotrophs) within the genus Methylobacter constitute the biological filter for methane (CH4) in many Arctic soils. Multiple Methylobacter strains have been identified in these environments but we seldom know the ecological significance of the different strains. High-Arctic peatlands in Svalbard are heavily influenced by herbivory, leading to reduced vascular plant and root biomass. Here, we have measured potential CH4 oxidation rates and identified the active methantrophs in grazed peat and peat protected from grazing by fencing (exclosures) for 18 years. Grazed peat sustained a higher water table, higher CH4 concentrations and lower oxygen (O2) concentrations than exclosed peat. Correspondingly, the highest CH4 oxidation potentials were closer to the O2 rich surface in the grazed than in the protected peat. A comparison of 16S rRNA genes showed that the majority of methanotrophs in both sites belong to the genus Methylobacter. Further analyses of pmoA transcripts revealed that several Methylobacter OTUs were active in the peat but that different OTUs dominated the grazed peat than the exclosed peat. We conclude that grazing influences soil conditions, the active CH4 filter and that different Methylobacter populations are responsible for CH4 oxidation depending on the environmental conditions.

| S-EPMC8202349 | biostudies-literature

Disease ecology across soil boundaries: effects of below-ground fungi on above-ground host-parasite interactions.

Project description:Host-parasite interactions are subject to strong trait-mediated indirect effects from other species. However, it remains unexplored whether such indirect effects may occur across soil boundaries and connect spatially isolated organisms. Here, we demonstrate that, by changing plant (milkweed Asclepias sp.) traits, arbuscular mycorrhizal fungi (AMF) significantly affect interactions between a herbivore (the monarch butterfly Danaus plexippus) and its protozoan parasite (Ophryocystis elektroscirrha), which represents an interaction across four biological kingdoms. In our experiment, AMF affected parasite virulence, host resistance and host tolerance to the parasite. These effects were dependent on both the density of AMF and the identity of milkweed species: AMF indirectly increased disease in monarchs reared on some species, while alleviating disease in monarchs reared on other species. The species-specificity was driven largely by the effects of AMF on both plant primary (phosphorus) and secondary (cardenolides; toxins in milkweeds) traits. Our study demonstrates that trait-mediated indirect effects in disease ecology are extensive, such that below-ground interactions between AMF and plant roots can alter host-parasite interactions above ground. In general, soil biota may play an underappreciated role in the ecology of many terrestrial host-parasite systems.

| S-EPMC4633881 | biostudies-literature

The increasing likelihood of temperatures above 30 to 40 °C in the United Kingdom.

Project description:As European heatwaves become more severe, summers in the United Kingdom (UK) are also getting warmer. The UK record temperature of 38.7 °C set in Cambridge in July 2019 prompts the question of whether exceeding 40 °C is now within reach. Here, we show how human influence is increasing the likelihood of exceeding 30, 35 and 40 °C locally. We utilise observations to relate local to UK mean extremes and apply the resulting relationships to climate model data in a risk-based attribution methodology. We find that temperatures above 35 °C are becoming increasingly common in the southeast, while by 2100 many areas in the north are likely to exceed 30 °C at least once per decade. Summers which see days above 40 °C somewhere in the UK have a return time of 100-300 years at present, but, without mitigating greenhouse gas emissions, this can decrease to 3.5 years by 2100.

| S-EPMC7326920 | biostudies-literature

Experimental warming increases ecosystem respiration by increasing above-ground respiration in alpine meadows of Western Himalaya.

Project description:Alpine ecosystems in the Himalaya, despite low primary productivity, store considerable amount of organic carbon. However, these ecosystems are highly vulnerable to climate warming which may stimulate ecosystem carbon efflux leading to carbon-loss and positive feedback. We used open-top chambers to understand warming responses of ecosystem respiration (ER) and soil respiration (SR) in two types of alpine meadows viz., herbaceous meadow (HM) and sedge meadow (SM), in the Western Himalaya. Experimental warming increased ER by 33% and 28% at HM and SM, respectively. No significant effect on SR was observed under warming, suggesting that the increase in ER was primarily due to an increase in above-ground respiration. This was supported by the warming-induced increase in above-ground biomass and decrease in SR/ER ratio. Soil temperature was the dominant controlling factor of respiration rates and temperature sensitivity of both ER and SR increased under warming, indicating an increase in contribution from plant respiration. The findings of the study suggest that climate warming by 1.5-2 °C would promote ER via increase in above-ground respiration during the growing season. Moreover, net C uptake in the alpine meadows may increase due to enhanced plant growth and relatively resistant SR under warming.

| S-EPMC7846769 | biostudies-literature

Psychrotolerant bacteria isolated from arctic soil that degrade polychlorinated biphenyls at low temperatures

Project description:Psychrotolerant polychlorinated biphenyl (PCB)-degrading bacteria were isolated at 7 degreesC from PCB-contaminated Arctic soil by using biphenyl as the sole organic carbon source. These isolates were distinguished from each other by differences in substrates that supported growth and substrates that were oxidized. 16S ribosomal DNA sequences suggest that these isolates are most closely related to the genus Pseudomonas. Total removal of Aroclor 1242, and rates of removal of selected PCB congeners, by cell suspensions of Arctic soil isolates and the mesophile Burkholderia cepacia LB400 were determined at 7, 37, and 50 degreesC. Total removal values of Aroclor 1242 at 7 degreesC by LB400 and most Arctic soil isolates were similar (between 2 and 3.5 &mgr;g of PCBs per mg of cell protein). However the rates of removal of some individual PCB congeners by Arctic isolates were up to 10 times higher than corresponding rates of removal by LB400. Total removal of Aroclor 1242 and the rates of removal of individual congeners by the Arctic soil bacteria were higher at 37 degreesC than at 7 degreesC but as much as 90% lower at 50 degreesC than at 37 degreesC. In contrast, rates of PCB removal by LB400 were higher at 50 degreesC than at 37 degreesC. In all cases, temperature did not affect the congener specificity of the bacteria. These observations suggest that the PCB-degrading enzyme systems of the bacteria isolated from Arctic soil are cold adapted.

| S-EPMC90929 | biostudies-literature

δ(13)C-CH4 reveals CH4 variations over oceans from mid-latitudes to the Arctic.

Project description:The biogeochemical cycles of CH4 over oceans are poorly understood, especially over the Arctic Ocean. Here we report atmospheric CH4 levels together with δ(13)C-CH4 from offshore China (31°N) to the central Arctic Ocean (up to 87°N) from July to September 2012. CH4 concentrations and δ(13)C-CH4 displayed temporal and spatial variation ranging from 1.65 to 2.63 ppm, and from -50.34% to -44.94% (mean value: -48.55 ± 0.84%), respectively. Changes in CH4 with latitude were linked to the decreasing input of enriched δ(13)C and chemical oxidation by both OH and Cl radicals as indicated by variation of δ(13)C. There were complex mixing sources outside and inside the Arctic Ocean. A keeling plot showed the dominant influence by hydrate gas in the Nordic Sea region, while the long range transport of wetland emissions were one of potentially important sources in the central Arctic Ocean. Experiments comparing sunlight and darkness indicate that microbes may also play an important role in regional variations.

| S-EPMC4555175 | biostudies-literature

Decline in biological soil crust N-fixing lichens linked to increasing summertime temperatures.

Project description:Biological soil crusts (biocrusts), comprised of mosses, lichens, and cyanobacteria, are key components to many dryland communities. Climate change and other anthropogenic disturbances are thought to cause a decline in mosses and lichens, yet few long-term studies exist to track potential shifts in these sensitive soil-surface communities. Using a unique long-term observational dataset from a temperate dryland with initial observations dating back to 1967, we examine the effects of 53 y of observed environmental variation and Bromus tectorum invasion on biocrust communities in a grassland never grazed by domestic livestock. Annual observations show a steep decline in N-fixing lichen cover (dominated by Collema species) from 1996 to 2002, coinciding with a period of extended drought, with Collema communities never able to recover. Declines in other lichen species were also observed, both in number of species present and by total cover, which were attributed to increasing summertime temperatures. Conversely, moss species gradually gained in cover over the survey years, especially following a large Bromus tectorum invasion at the study onset (ca. 1996 to 2001). These results support a growing body of studies that suggests climate change is a key driver in changes to certain components of late-successional biocrust communities. Results here suggest that warming may partially negate decades of protection from disturbance, with biocrust communities reaching a vital tipping point. The accelerated rate of ongoing warming observed in this study may have resulted in the loss of lichen cover and diversity, which could have long-term implications for global temperate dryland ecosystems.

| S-EPMC9169860 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data