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Exploring potentialities of avian genomic research in Nepalese Himalayas

ABSTRACT: Nepal, a small landlocked country in South Asia, holds about 800 km of Himalayan Mountain range including the Earth’s highest mountain. Within such a mountain range in the north and plain lowlands in the south, Nepal provides a habitat for about 9% of global avian fauna. However, this diversity is underrated because of the lack of enough studies, especially using molecular tools to quantify and understand the distribution patterns of diversity. In this study, we reviewed the studies in the last two decades (2000‒2019) that used molecular methods to study the biodiversity in Nepal to examine the ongoing research trend and focus. Although Nepalese Himalaya has many opportunities for cutting-edge molecular research, our results indicated that the rate of genetic/genomic studies is much slower compared to the regional trends. We found that genetic research in Nepal heavily relies on resources from international institutes and that too is mostly limited to research on species monitoring, distribution, and taxonomic validations. Local infrastructures to carry out cutting-edge genomic research in Nepal are still in their infancy and there is a strong need for support from national/international scientists, universities, and governmental agencies to expand such genomic infrastructures in Nepal. We particularly highlight avian fauna as a potential future study system in this region that can be an excellent resource to explore key biological questions such as understanding eco-physiology and molecular basis of organismal persistence to changing environment, evolutionary processes underlying divergence and speciation, or mechanisms of endemism and restrictive distribution of species.

Supplementary Information

The online version contains supplementary material available at 10.1186/s40657-021-00290-5.

SUBMITTER: Ghimire P

PROVIDER: S-EPMC8556808 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:A surprisingly large number of species potentially threatened by human harvest lack quantitative ecological studies incorporating harvest effects, especially clonal species in the alpine Himalayas. We studied density and biomass variation of a threatened medicinal herb, Neopicrorhiza scrophulariiflora, to examine the effect of harvest on plant performance. The study covered two regions with contrasting harvest situations-one with open-access and another protected from commercial harvesting. Four populations from each region were compared along an elevation gradient (3,800-4,800 m). Also, we conducted in situ interviews with 165 and 38 medicinal and aromatic plant users in open-access and protected regions, respectively, to assess the collection and use patterns of the target species. The quantity harvested per household for traditional healthcare use was similar in both regions. We found no evidence of trade-driven collection in the protected region but in the open-access region a trade-based annual collection of 35-465 kg dried rhizomes per household had a strong negative effect on both density and biomass. In the protected region, the effect of harvest intensity on plant density was positive for vegetative and negative for reproductive individuals, whereas in the open-access region, the effect was negative for both vegetative and reproductive individuals. The results indicated that a low harvest intensity had no adverse impact on N. scrophulariiflora populations; however, quantification of the optimum level of harvest remains to be explored. Shrub vegetation appeared to buffer the harvest impact on plant density, possibly through the retention of additional moisture. To maintain population viability, we suggest regulating harvest, for example, by introducing rotational harvest systems, ensuring that a sufficient number of reproductive individuals are left as a source of propagules in each harvested population and that populations are given time to recover between harvests.

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Exploring potentialities of avian genomic research in Nepalese Himalayas

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