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Fusing multidimensional hierarchical information into finer spatial landscape metrics

ABSTRACT: Abstract One of the core issues of ecology is to understand the effects of landscape patterns on ecological processes. For this, we need to accurately capture changes in the fine landscape structures to avoid losing information about spatial heterogeneity. The landscape pattern indicators (LPIs) can characterize the spatial structures and give some information about landscape patterns. However, researches on LPIs had mainly focused on the horizontal structure of landscape patterns, while few studies addressed vertical relationships between the levels of hierarchical landscape structures. Thus, the ignorance of the vertical hierarchical relationships may cause serious biases and reduce LPIs' representational ability and accuracy. The hierarchy theory about the landscape pattern structures could notably reduce the loss of hierarchical information, and the information entropy could quantitatively describe the vertical status of landscape units. Therefore, we established a new multidimensional fusion method of LPIs based on hierarchy theory and information entropy. Here, we created a general fusion formula for commonly used simple LPIs based on two‐grade land use data (whose land use classification system contains two grades/levels) and derived 3 fusion landscape pattern indicators (FLIs) with a case study. The results show that the information about fine spatial structure is captured by the fusion method. The regions with the most differences between the FLIs and the traditional LPIs are those with the largest vertical structure such as the ecological ecotones, where vertical structure was ignored before. The FLIs have a finer spatial representational ability and accuracy, not only retaining the main trend information of first‐grade land use data, but also containing the internal detail information of second‐grade land use data. Capturing finer spatial information of landscape patterns should encourage the application of fusion method, which should be suitable for more LPIs or more dimensional data. And the increased accuracy of FLIs will improve ecological models that rely on finer spatial information. The ignorance of the vertical hierarchical relationships may cause serious biases reduced landscape metrics' representational ability and accuracy. Capturing finer spatial information of landscape patterns should encourage to understand the effects of landscape patterns on ecological processes.

SUBMITTER: Fu G

PROVIDER: S-EPMC8571621 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:Landscape is an ecological category represented by a complex system formed by interactions between society and nature. Spatial patterns of different land uses present in a landscape reveal past and present processes responsible for its dynamics and organisation. Measuring the complexity of these patterns (in the sense of their spatial heterogeneity) allows us to evaluate the integrity and resilience of these complex environmental systems. Here, we show how landscape metrics based on information entropy can be applied to evaluate the complexity (in the sense of spatial heterogeneity) of patches patterns, as well as their transition zones, present in a Cerrado conservation area and its surroundings, located in south-eastern Brazil. The analysis in this study aimed to elucidate how changes in land use and the consequent fragmentation affect the complexity of the landscape. The scripts CompPlex HeROI and CompPlex Janus were created to allow calculation of information entropy (He), variability (He/Hmax), and López-Ruiz, Mancini, and Calbet (LMC) and Shiner, Davison, and Landsberg (SDL) measures. CompPlex HeROI enabled the calculation of these measures for different regions of interest (ROIs) selected in a satellite image of the study area, followed by comparison of the complexity of their patterns, in addition to enabling the generation of complexity signatures for each ROI. CompPlex Janus made it possible to spatialise the results for these four measures in landscape complexity maps. As expected, both for the complexity patterns evaluated by CompPlex HeROI and the complexity maps generated by CompPlex Janus, the areas with vegetation located in a region of intermediate spatial heterogeneity had lower values for the He and He/Hmax measures and higher values for the LMC and SDL measurements. So, these landscape metrics were able to capture the behaviour of the patterns of different types of land use present in the study area, bringing together uses linked to vegetation with increased canopy coverage and differentiating them from urban areas and transition areas that mix different uses. Thus, the algorithms implemented in these scripts were demonstrated to be robust and capable of measuring the variability in information levels from the landscape, not only in terms of spatial datasets but also spectrally. The automation of measurement calculations, owing to informational entropy provided by these scripts, allows a quick assessment of the complexity of patterns present in a landscape, and thus, generates indicators of landscape integrity and resilience.

Project description:Flow cytometry holds promise to accelerate antibiotic susceptibility determinations; however, without robust multidimensional statistical analysis, general discrimination criteria have remained elusive. In this study, a new statistical method, probability binning signature quadratic form (PB-sQF), was developed and applied to analyze flow cytometric data of bacterial responses to antibiotic exposure. Both sensitive lab strains (Escherichia coli and Pseudomonas aeruginosa) and a multidrug resistant, clinically isolated strain (E. coli) were incubated with the bacteria-targeted dye, maltohexaose-conjugated IR786, and each of many bactericidal or bacteriostatic antibiotics to identify changes induced around corresponding minimum inhibition concentrations (MIC). The antibiotic-induced damages were monitored by flow cytometry after 1-h incubation through forward scatter, side scatter, and fluorescence channels. The 3-dimensional differences between the flow cytometric data of the no-antibiotic treated bacteria and the antibiotic-treated bacteria were characterized by PB-sQF into a 1-dimensional linear distance. A 99% confidence level was established by statistical bootstrapping for each antibiotic-bacteria pair. For the susceptible E. coli strain, statistically significant increments from this 99% confidence level were observed from 1/16x MIC to 1x MIC for all the antibiotics. The same increments were recorded for P. aeruginosa, which has been reported to cause difficulty in flow-based viability tests. For the multidrug resistant E. coli, significant distances from control samples were observed only when an effective antibiotic treatment was utilized. Our results suggest that a rapid and robust antimicrobial susceptibility test (AST) can be constructed by statistically characterizing the differences between sample and control flow cytometric populations, even in a label-free scheme with scattered light alone. These distances vs paired controls coupled with rigorous statistical confidence limits offer a new path toward investigating initial biological responses, screening for drugs, and shortening time to result in antimicrobial sensitivity testing.

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Fusing multidimensional hierarchical information into finer spatial landscape metrics

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