Dataset Information

Automated Screening for Abdominal Aortic Aneurysm in CT Scans under Clinical Conditions Using Deep Learning.

ABSTRACT: Abdominal aortic aneurysms (AAA) may remain clinically silent until they enlarge and patients present with a potentially lethal rupture. This necessitates early detection and elective treatment. The goal of this study was to develop an easy-to-train algorithm which is capable of automated AAA screening in CT scans and can be applied to an intra-hospital environment. Three deep convolutional neural networks (ResNet, VGG-16 and AlexNet) were adapted for 3D classification and applied to a dataset consisting of 187 heterogenous CT scans. The 3D ResNet outperformed both other networks. Across the five folds of the first training dataset it achieved an accuracy of 0.856 and an area under the curve (AUC) of 0.926. Subsequently, the algorithms performance was verified on a second data set containing 106 scans, where it ran fully automated and resulted in an accuracy of 0.953 and an AUC of 0.971. A layer-wise relevance propagation (LRP) made the decision process interpretable and showed that the network correctly focused on the aortic lumen. In conclusion, the deep learning-based screening proved to be robust and showed high performance even on a heterogeneous multi-center data set. Integration into hospital workflow and its effect on aneurysm management would be an exciting topic of future research.

SUBMITTER: Golla AK

PROVIDER: S-EPMC8621263 | biostudies-literature | 2021 Nov

REPOSITORIES: biostudies-literature

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Automated Screening for Abdominal Aortic Aneurysm in CT Scans under Clinical Conditions Using Deep Learning.

Golla Alena-K AK Tönnes Christian C Russ Tom T Bauer Dominik F DF Froelich Matthias F MF Diehl Steffen J SJ Schoenberg Stefan O SO Keese Michael M Schad Lothar R LR Zöllner Frank G FG Rink Johann S JS

Diagnostics (Basel, Switzerland) 20211117 11

Abdominal aortic aneurysms (AAA) may remain clinically silent until they enlarge and patients present with a potentially lethal rupture. This necessitates early detection and elective treatment. The goal of this study was to develop an easy-to-train algorithm which is capable of automated AAA screening in CT scans and can be applied to an intra-hospital environment. Three deep convolutional neural networks (ResNet, VGG-16 and AlexNet) were adapted for 3D classification and applied to a dataset c ...[more]

PMID: 34829478

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Project description:PurposeTo automate skeletal muscle segmentation in a pediatric population using convolutional neural networks that identify and segment the L3 level at CT.Materials and methodsIn this retrospective study, two sets of U-Net-based models were developed to identify the L3 level in the sagittal plane and segment the skeletal muscle from the corresponding axial image. For model development, 370 patients (sampled uniformly across age group from 0 to 18 years and including both sexes) were selected between January 2009 and January 2019, and ground truth L3 location and skeletal muscle segmentation were manually defined. Twenty percent (74 of 370) of the examinations were reserved for testing the L3 locator and muscle segmentation, while the remaining were used for training. For the L3 locator models, maximum intensity projections (MIPs) from a fixed number of central sections of sagittal reformats (either 12 or 18 sections) were used as input with or without transfer learning using an L3 localizer trained on an external dataset (four models total). For the skeletal muscle segmentation models, two loss functions (weighted Dice similarity coefficient [DSC] and binary cross-entropy) were used on models trained with or without data augmentation (four models total). Outputs from each model were compared with ground truth, and the mean relative error and DSC from each of the models were compared with one another.ResultsL3 section detection trained with an 18-section MIP model with transfer learning had a mean error of 3.23 mm ± 2.61 standard deviation, which was within the reconstructed image thickness (3 or 5 mm). Skeletal muscle segmentation trained with the weighted DSC loss model without data augmentation had a mean DSC of 0.93 ± 0.03 and mean relative error of 0.04 ± 0.04.ConclusionConvolutional neural network models accurately identified the L3 level and segmented the skeletal muscle on pediatric CT scans.Supplemental material is available for this article.See also the commentary by Cadrin-Chênevert in this issue.© RSNA, 2021.

Dataset Information

Automated Screening for Abdominal Aortic Aneurysm in CT Scans under Clinical Conditions Using Deep Learning.

Publications

Automated Screening for Abdominal Aortic Aneurysm in CT Scans under Clinical Conditions Using Deep Learning.

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