Browse
Submit Data
Databases
API
Help

Dataset Information

16 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gradients of salinity and plant community richness and diversity in two different Mediterranean coastal ecosystems in NW Sardinia.

ABSTRACT: This study aimed to test if differences in soil salinity, plant richness and diversity were significantly affected by habitat, site and distance from the seashore at three sandy and three rocky coastal sites in north-western Sardinia. Each site has been divided into three belts placed at an equal distance of 50 m from the shoreline. We measured soil salinity using a probe and vascular plants richness and diversity using linear transects at all sites. Average soil salinity varied from 0.115 g/l to 0.180 g/l; it was higher in the rocky habitats than in the sandy ones. A total of 21 species were found per transect/site at the rocky sites and 30 species per transect/site at the sandy sites, with an average of Shannon and Weaver's Diversity Index of 1.8 per each belt at each site. These data confirm that, also in the Mediterranean islands, there are coastal gradients of soil salinity from the seashore to inland areas and that also vascular plant richness and diversity are influenced by the distance from the sea. Soil salinity was strongly affected by the type of habitat, being average at the rocky coasts and negligible at the sandy shores. The site effect was not significant for both soil salinity and plant richness and diversity.

SUBMITTER: Maccioni A

PROVIDER: S-EPMC8626409 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Plant diversity and community composition in managed humid coastal dune slacks in NW England.

Project description:Humid coastal dune slacks are an endangered habitat in Northwestern Europe. In the UK, dune slacks are currently classified as being in 'unfavourable' condition, with projected decrease in England of up to 30% by 2036. Studies in mainland Europe suggest that regional factors (e.g. slack area, age, and isolation) are more important than local factors (e.g. soil, pH, soil nutrient and water status) in driving successional vegetation processes in coastal slacks. However, this has never been tested for the UK, where approximately 14% of European slacks occur. We used previously established survey protocols to test whether regional factors are more important than local factors in UK coastal slacks, along the Sefton Coast in NW England. We found that slack area and slack age were more important than local factors in driving plant community composition and species richness. We also showed that higher levels of management, such as active grazing and invasive shrub and tree removal, are effective in increasing soil moisture levels in slacks. Our results suggest that similar successional processes are likely to be important in slacks in the NW of England, compared to mainland Europe.

| S-EPMC8375971 | biostudies-literature

Spatiotemporal Dynamics of Total Viable Vibrio spp. in a NW Mediterranean Coastal Area.

Project description:A cellular approach combining Direct Viable Counting and Fluorescent In Situ Hybridization using a one-step multiple-probe technique and Solid Phase Cytometry (DVC-FISH-SPC) was developed to monitor total viable vibrios and cover the detection of a large diversity of vibrios. FISH combined three probes in the same assay and targeted sequences located at different positions on the 16S rRNA of Vibrio and Aliivibrio members. We performed a 10-month in situ study to investigate the weekly dynamics of viable vibrios relative to culturable counts at two northwestern Mediterranean coastal sites, and identified the key physicochemical factors for their occurrence in water using a multivariate analysis. Total viable and culturable cell counts showed the same temporal pattern during the warmer season, whereas the ratios between both methods were inverted during the colder seasons (<15°C), indicating that some of the vibrio community had entered into a viable but non-culturable (VBNC) state. We confirmed that Seawater Surface Temperature explained 51-62% of the total variance in culturable counts, and also showed that the occurrence of viable vibrios is controlled by two variables, pheopigment (15%) and phosphate (12%) concentrations, suggesting that other unidentified factors play a role in maintaining viability.

| S-EPMC5606690 | biostudies-other

Biophysical feedbacks mediate carbonate chemistry in coastal ecosystems across spatiotemporal gradients.

Project description:Ocean acidification (OA) projections are primarily based on open ocean environments, despite the ecological importance of coastal systems in which carbonate dynamics are fundamentally different. Using temperate tide pools as a natural laboratory, we quantified the relative contribution of community composition, ecosystem metabolism, and physical attributes to spatiotemporal variability in carbonate chemistry. We found that biological processes were the primary drivers of local pH conditions. Specifically, non-encrusting producer-dominated systems had the highest and most variable pH environments and the highest production rates, patterns that were consistent across sites spanning 11° of latitude and encompassing multiple gradients of natural variability. Furthermore, we demonstrated a biophysical feedback loop in which net community production increased pH, leading to higher net ecosystem calcification. Extreme spatiotemporal variability in pH is, thus, both impacting and driven by biological processes, indicating that shifts in community composition and ecosystem metabolism are poised to locally buffer or intensify the effects of OA.

| S-EPMC5768679 | biostudies-literature

Stepped Coastal Water Warming Revealed by Multiparametric Monitoring at NW Mediterranean Fixed Stations.

Project description:Since 2014, the global land and sea surface temperature has scaled 0.23 °C above the decadal average (2009-2018). Reports indicate that Mediterranean Sea temperatures have been rising at faster rates than in the global ocean. Oceanographic time series of physical and biogeochemical data collected from an onboard and a multisensor mooring array in the northwestern Mediterranean Sea (Blanes submarine canyon, Balearic Sea) during 2009-2018 revealed an abrupt temperature rising since 2014, in line with regional and global warming. Since 2014, the oligotrophic conditions of the water column have intensified, with temperature increasing 0.61 °C on the surface and 0.47 °C in the whole water column in continental shelf waters. Water transparency has increased due to a decrease in turbidity anomaly of -0.1 FTU. Since 2013, inshore chlorophyll a concentration remained below the average (-0.15 mg·l-1) and silicates showed a declining trend. The mixed layer depth showed deepening in winter and remained steady in summer. The net surface heat fluxes did not show any trend linked to the local warming, probably due to the influence of incoming offshore waters produced by the interaction between the Northern Current and the submarine canyon. Present regional and global water heating pattern is increasing the stress of highly diverse coastal ecosystems at unprecedented levels, as reported by the literature. The strengthening of the oligotrophic conditions in the study area may also apply as a cautionary warning to similar coastal ecosystems around the world following the global warming trend.

| S-EPMC7248696 | biostudies-literature

Prokaryotic Diversity and Distribution Along Physical and Nutrient Gradients in the Tunisian Coastal Waters (South Mediterranean Sea).

Project description:Prokaryotes play an important role in biogeochemical cycling in marine ecosystems, but little is known about their diversity and composition, and how they may contribute to the ecological functioning of coastal areas in the South Mediterranean Sea. This study investigated bacterial and archaeal community diversity in seawater samples along the Tunisian coast subject to important physicochemical disturbances. The 16S amplicon sequencing survey revealed higher prokaryotic diversity in the northern Tunisian bays than in southeastern waters (Gulf of Gabès). The major taxonomic groups identified in all samples were Alphaproteobacteria (40.9%), Gammaproteobacteria (18.7%), Marine Group II Euryarchaeota (11.3%), and Cyanobacteria (10.9%). Among them, the relative abundance of Alteromonadales, Prochlorococcus, and some clades of Pelagibacterales (SAR11) significantly differed between the northern and the southern bays, whereas no difference was observed across coastal waters in the archaeal Candidatus Poseidoniales (MGII), Synechococcus, and Pelagibacteraceae (SAR11 clade Ia), for which no relationship was observed with the environmental variables. Both Pseudoalteromonas and Alteromonas levels increased with the increasing salinity, density and nutrients (NH4 + and/or PO4 3-) gradients detected toward the southern waters, while the SAR11 clades Ib and IV and Prochlorococcus, decreased in the shallow, salty and nutrient-rich coastal waters of the Gulf of Gabès. Rhodobacteraceae was positively correlated with Synechococcus and chlorophyll levels, suggesting a relationship with phytoplankton biomass. The present study provides the first insights into planktonic prokaryotic community composition in the South Mediterranean Sea through the analysis of Tunisian seawaters, which may support further investigations on the role of bacterioplankton in the biogeochemistry of these ecosystems.

| S-EPMC7735998 | biostudies-literature

Gene Expression in Prokaryotic Microbial Assemblages Across Salinity Gradients in the Columbia River Coastal Margin

2010-09-10 | GSE18303 | GEO

Plant richness, turnover, and evolutionary diversity track gradients of stability and ecological opportunity in a megadiversity center.

Project description:Research on global patterns of diversity has been dominated by studies seeking explanations for the equator-to-poles decline in richness of most groups of organisms, namely the latitudinal diversity gradient. A problem with this gradient is that it conflates two key explanations, namely biome stability (age and area) and productivity (ecological opportunity). Investigating longitudinal gradients in diversity can overcome this problem. Here we investigate a longitudinal gradient in plant diversity in the megadiverse Cape Floristic Region (CFR). We test predictions of the age and area and ecological opportunity hypotheses using metrics for both taxonomic and phylogenetic diversity and turnover. Our plant dataset includes modeled occurrences for 4,813 species and dated molecular phylogenies for 21 clades endemic to the CFR. Climate and biome stability were quantified over the past 140,000 y for testing the age and area hypothesis, and measures of topographic diversity, rainfall seasonality, and productivity were used to test the ecological opportunity hypothesis. Results from our spatial regression models showed biome stability, rainfall seasonality, and topographic heterogeneity were the strongest predictors of taxonomic diversity. Biome stability alone was the strongest predictor of all diversity metrics, and productivity played only a marginal role. We argue that age and area in conjunction with non-productivity-based measures of ecological opportunity explain the CFR's longitudinal diversity gradient. We suggest that this model may possibly be a general explanation for global diversity patterns, unconstrained as it is by the collinearities underpinning the latitudinal diversity gradient.

| S-EPMC7443951 | biostudies-literature

Gene Expression in Prokaryotic Microbial Assemblages Across Salinity Gradients in the Columbia River Coastal Margin

Project description:Analysis of microbial gene expression in response to physical and chemical gradients forming in the Columbia River, estuary, plume and coastal ocean was done in the context of the environmental data base. Gene expression was analyzed for 2,234 individual genes that were selected from fully sequenced genomes of 246 prokaryotic species (bacteria and archaea) as related to the nitrogen metabolism and carbon fixation. Seasonal molecular portraits of differential gene expression in prokaryotic communities during river-to-ocean transition were created using freshwater baseline samples (268, 270, 347, 002, 006, 207, 212). Total RNA was isolated from 64 filtered environmental water samples collected in the Columbia River coastal margin during 4 research cruises (14 from August, 2007; 17 from November, 2007; 18 from April, 2008; and 16 from June, 2008), and analyzed using microarray hybridization with the CombiMatrix 4X2K format. Microarray targets were prepared by reverse transcription of total RNA into fluorescently labeled cDNA. All samples were hybridized in duplicate, except samples 212 and 310 (hybridized in triplicate) and samples 336, 339, 50, 152, 157, and 199 (hybridized once). Sample location codes: number shows distance from the coast in km; CR, Columbia River transect in the plume and coastal ocean; NH, Newport Hydroline transect in the coastal ocean at Newport, Oregon; AST and HAM, Columbia River estuary locations near Astoria (river mile 7-9) and Hammond (river mile 5), respectively; TID, Columbia River estuary locations in the tidal basin (river mile 22-23); BA, river location at Beaver Army Dock (river mile 53) near Quincy, Oregon; UP, river location at mile 74.

2010-09-10 | E-GEOD-18303 | biostudies-arrayexpress

Data on coastal dunes vulnerability of eleven microtidal wave-dominated beaches of Sardinia (Italy, western Mediterranean).

Project description:This article contains data about the values of the Dune Vulnerability Index (DVI) and the Partial Index Vulnerability (IVp) of eleven coastal dune systems located in Sardinia (Italy, western Mediterranean). Specifically, we present the values of 59 variables that summarize the condition of the studied dune systems, clustered in five groups: Geomorphological Condition (GCD), Marine Influence (MI), Aeolian Influence (AI), Vegetation Condition (VC), and Human Effects (HE). Data were collected during numerous field surveys and using aerial-photos. This dataset can be useful to evaluate the coastal dune vulnerability of several Sardinian beaches in order to drive local coastal managers towards an efficient management.

| S-EPMC6463087 | biostudies-literature

Water Column Microbial Communities Vary along Salinity Gradients in the Florida Coastal Everglades Wetlands.

Project description:Planktonic microbial communities mediate many vital biogeochemical processes in wetland ecosystems, yet compared to other aquatic ecosystems, like oceans, lakes, rivers or estuaries, they remain relatively underexplored. Our study site, the Florida Everglades (USA)-a vast iconic wetland consisting of a slow-moving system of shallow rivers connecting freshwater marshes with coastal mangrove forests and seagrass meadows-is a highly threatened model ecosystem for studying salinity and nutrient gradients, as well as the effects of sea level rise and saltwater intrusion. This study provides the first high-resolution phylogenetic profiles of planktonic bacterial and eukaryotic microbial communities (using 16S and 18S rRNA gene amplicons) together with nutrient concentrations and environmental parameters at 14 sites along two transects covering two distinctly different drainages: the peat-based Shark River Slough (SRS) and marl-based Taylor Slough/Panhandle (TS/Ph). Both bacterial as well as eukaryotic community structures varied significantly along the salinity gradient. Although freshwater communities were relatively similar in both transects, bacterioplankton community composition at the ecotone (where freshwater and marine water mix) differed significantly. The most abundant taxa in the freshwater marshes include heterotrophic Polynucleobacter sp. and potentially phagotrophic cryptomonads of the genus Chilomonas, both of which could be key players in the transfer of detritus-based biomass to higher trophic levels.

| S-EPMC8874701 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data