Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Rana johnsi (Smith, 2009) (Anura: Ranidae) and its phylogeny.

ABSTRACT: Rana johnsi (Smith 2009) firstly considered as the member of genus Pseudorana, has been moved into the genus Rana. In this study, we sequenced the complete mitochondrial (mt) genome of R. johnsi using the Sanger method. The circular mt genome was 17,873 bp in length and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosome RNA genes, and one control region. The overall nucleotide composition in majority-strand was 28% A, 29% T, 29% C, and 14% G. We discussed the phylogenetic relationship of R. johnsi in genus Rana using ML and BI analyses based on 13 PCGs. Excluding the clade of subgenus Lithobates, Rana draytonii was the basal clade to all other Rana species, which included R. johnsi as the basal clade. The monophyly of genus Rana was supported, whereas Pseudorana was failed to support.

SUBMITTER: Chen QP

PROVIDER: S-EPMC8635646 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Rana johnsi (Smith, 2009) (Anura: Ranidae) and its phylogeny.

Chen Qing-Ping QP Wu Lian L Zhang Shu-Sheng SS Liu Lei-Lei LL Jin Wan-Ting WT Zhang Jia-Yong JY Zhang Yong-Pu YP Yu Dan-Na DN

Mitochondrial DNA. Part B, Resources 20211129 12

Rana johnsi (Smith 2009) firstly considered as the member of genus Pseudorana, has been moved into the genus Rana. In this study, we sequenced the complete mitochondrial (mt) genome of R. johnsi using the Sanger method. The circular mt genome was 17,873 bp in length and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosome RNA genes, and one control region. The overall nucleotide composition in majority-strand was 28% ...[more]

PMID: 34869888

Similar Datasets

The complete mitochondrial genome of Rana coreana (Anura: Ranidae).

Project description:Rana coreana is a brown frog species native to the Korean Peninsula. We characterized the complete mitochondrial genome of the species. The mitochondrial genome sequence of R. coreana is 22,262 bp and comprises 13 protein-coding genes, two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and two control regions (CRs). The CR duplication and gene organization were identical to those observed in Rana kunyuensis and Rana amurensis. A total of 13 protein-coding genes were used to examine the phylogenetic relationships between this species and the genus Rana. R. coreana living on the Korean Peninsula, formed a cluster with R. kunyuensis and R. amurensis, with R. coreana showing the closest phylogenetic affinity for R. kunyuensis.

| S-EPMC10332202 | biostudies-literature

The complete mitochondrial genome sequence of Rana dabieshanensis (Anura: Ranidae).

Project description:Rana dabieshanensis is a species of frog within the family Ranidae. In this study, we assembled a complete mitochondrial genome (mito-genome) for R. dabieshanensis by high-throughput sequencing technology. It is 18,291 bp and includes 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one control region. The nucleotide composition is A: 27.0%, T: 28.6%, C: 29.3% and G: 15.2%. Two overlaps among the 13 protein-coding genes were found: ATP8/ATP6, ND4L/ND4. The study of phylogenetic analysis based on complete mitochondrial genome showed that there was close genetic relationship between R. dabieshanensis and R. omeimontis and it is useful for systematic analyses of genus Rana.

| S-EPMC8291061 | biostudies-literature

Sequencing and analysis of the complete mitochondrial genome of Rana amurensis (Anura: Ranidae).

Project description:In this study, the complete mitogenome sequence of Rana amurensis (Anura: Ranidae) is determined using long PCR. It is a circular molecule of 20,571 bp in length (GenBank accession no. MF370348). The complete mtDNA sequence of R. amurensis contained 2 rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, 13 protein-coding genes (PCGs) and 2 control regions (D-loops). The nucleotide composition was 28.6% A, 26.8% C, 14.0% G and 30.6% T. Mitochondrial genome analyses based on NJ method yield phylogenetic trees, including that 20 reported family Ranidae frogs. These molecular data presented here provide a useful tool for systematic analyses of genus Rana.

| S-EPMC7800792 | biostudies-literature

The complete mitochondrial genome of Rana wuyiensis (Anura, Ranidae) and its phylogenetic analysis.

Project description:The complete mitochondrial genome (mitogenome) of Rana wuyiensis (Anura, Ranidae) was sequenced and annotated. The circular complete mitogenome was 17,779 bp in length (OL467321) and constituted of 37 genes including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), and two ribosomal RNAs (rRNAs), and a D-loop region. The result of Bayesian phylogenetic analysis indicated that R. wuyiensis exhibits a close relationship with R. johnsi. R. wuyiensis was recently discovered and therefore holds a lot of potential for future research studies. Our study added a new mitochondrial data and provided valuable reference material to the taxonomy of Rana.

| S-EPMC9037220 | biostudies-literature

The complete mitochondrial genome of the Rana kukunoris (Anura: Ranidae) from Inner Mongolia, China.

Project description:We determined the whole mtNDA genome of the Plateau brown frog (Rana kukunoris) in Helan Mountains, Inner Mongolia. The complete mitochondrial genome consists of 13 protein-coding, 22 tRNA, 2 rRNA genes, and 1 control region (CR), and its total length is 16,644 bp. Three overlaps among the 13 protein-coding genes were found: ATP8/ATP6, ND4L/ND4, and ND5/ND6. The CR is 837 bp in length. The nucleotide composition is 27.49% A, 29.06% T, 14.77% G, 28.68% C. The result of phylogenetic analysis showed that there was close genetic relationship between R. kukunoris and Rana chensinensis.

| S-EPMC7748507 | biostudies-literature

The complete mitochondrial genome information of Rana uenoi (Amphibia, Anura, Ranidae) and the phylogenetic implication.

Project description:We determined the complete mitochondrial genome of Rana uenoi (Anura: Ranidae) for the first time. The whole sequences were 17,370 bp and included 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. The gene arrangement was completely identical to those observed from other Ranidae species. We used 11 protein-coding genes to examine the phylogenetic placement of this species in the genus Rana. Rana dybowskii was the closest sister species to R. uenoi. The clade of R. uenoi and R. dybowskii formed a cluster with Rana huarensis, which had a sister relationship with the group of Rana amurensis, Rana coreana, and Rana kunyuensis.

| S-EPMC7928165 | biostudies-literature

The complete mitochondrial genome of Odorrana grahami (Anura: Ranidae).

Project description:The mitochondrial genome of the Disckless-fingered Odorous Frog, Odorrana grahami (Anura: Ranidae), was sequenced using high-throughput sequencing technology. The genome length was 17864 bp, including 22 tRNA genes, 13 protein-coding genes, 2 rRNA genes and 1 control region (D-loop). The AT content of the mitochondrial genome was 55.9%. The composition of mitochondrial genome of O. grahami is similar to that of other species of the genus Odorrana. Phylogenetic analysis of the mitochondrial genomes of six congeners shows that O. grahami is sister to O. margaretae, but the analysis using 16S rRNA gene of additional congeners do not resolve their relationships.

| S-EPMC8158192 | biostudies-literature

The complete mitochondrial genome of the Odorrana schmackeri (Anura, Ranidae).

Project description:The complete mitochondrial genome of O. schmackeri has been sequenced and characterized in this study. The mitogenome is a circular molecule of 18 610 bp in length, containing 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 21 transfer RNA (tRNA) genes and a non-coding D-loop region (control region). Its gene arrangements are identical to the typical neobatrachian-type except for the loss of tRNAHis gene. Our data provide a useful resource for the phylogenetic studies of genus Odorrana.

| S-EPMC7800420 | biostudies-literature

Complete mitochondrial genome of the American bullfrog in Korea, Lithobates catesbeianus (Anura: Ranidae).

Project description:The complete mitochondrial (mt) genome of Lithobates catesbeianus was sequenced and characterized. The circular mt genome was constituted of of 37 genes (13 protein-coding genes, 22 transfer RNAs, and 2 ribosomal RNAs) and a non-coding region (NCR). Phylogenetic analysis based on the full mt genome sequences confirmed that among the genus Lithobates, L. catesbeianus Korea is included in a monophyletic group with L. catesbeianus China, but not with either L. catesbeianus Japan or L. catesbeianus Canada. This is the first completed mt genome from L. catesbeianus Korea, which provide data for further study of phylogeny in Lithobates spp. that have been introduced into a number of different countries originally from North America.

| S-EPMC7748749 | biostudies-literature

The complete mitochondrial genome of Amolops hainanensis (anura: ranidae).

Project description:The complete mitochondrial genome sequence of Amolops hainanensis is 17778 bp in length (GenBank accession number PP734094) and contains 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The mitochondrial gene arrangement of A. hainanensis is identical to those of other Amolops species and has a typical neobatrachian arrangement. Mitogenomic phylogenetic analysis revealed that Amolops is composed of two main clades. A. hainanensis is a member of the western clade and split from the basalmost node of the subclade composed of the other species of the western clade of Amolops.

| S-EPMC11892061 | biostudies-literature