Browse
Submit Data
Databases
API
Help

Dataset Information

60 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete chloroplast genome sequence of Artabotrys pilosus (Annonaceae).

ABSTRACT: Artabotrys pilosus (Annonaceae) is endemic to China, this plant has high medicinal value and broad application prospect. In this study, we assembled and systematically analyzed the chloroplast genome of A. pilosus on the basis of DNA sequencing using high-throughput techniques. The chloroplast sequence of A. pilosus was 178,195 bp in length, including two inverted repeat regions of 42,150 bp, a large single-copy region of 90,797 bp and a small single-copy region of 3098 bp. It was predicted to contain 142 genes, of which 96 are coding, 38 are tRNA genes, and eight are rRNA genes. The overall GC content was 38.8%; this was higher in the IRs (40.4%) when compared to the LSC (37.6%) and the SSC (32%) regions. Phylogenetic analysis showed that A. pilosus is in subfamily Annonoideae.

SUBMITTER: Liang ZR

PROVIDER: S-EPMC8667941 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete chloroplast genome sequence of Artabotrys pilosus (Annonaceae).

Liang Ze-Rui ZR Lei Jin-Man JM Zhang Hui H Li Yong-Quan YQ Zhang Bipei B

Mitochondrial DNA. Part B, Resources 20211210 1

Artabotrys pilosus (Annonaceae) is endemic to China, this plant has high medicinal value and broad application prospect. In this study, we assembled and systematically analyzed the chloroplast genome of A. pilosus on the basis of DNA sequencing using high-throughput techniques. The chloroplast sequence of A. pilosus was 178,195 bp in length, including two inverted repeat regions of 42,150 bp, a large single-copy region of 90,797 bp and a small single-copy region of 3098 bp. ...[more]

PMID: 34912957

Similar Datasets

Complete chloroplast genome of Artabotrys hexapetalus (L.f.) Bhandari 1965 (Annonaceae).

Project description:Artabotrys hexapetalus (L.f.) Bhandari, 1965, an evergreen climbing shrub of significant value, is prominent in Chinese history and culture. The whole-gene sequencing of its chloroplast genome using Illumina pair-end sequencing data is conducted during this research. The complete chloroplast genome was determined to be 178,457 bp in size, separated by a large single copy (LSC) and a small single copy (SSC) region of 90,803 and 3,066 bp, respectively. A total of 134 genes were identified, including 90 protein-coding genes, 36 tRNA, and eight rRNA genes. Phylogenetic analysis revealed a close relationship between A. hexapetalus and Artabotrys pilosus, forming a sister branch with 100% support. The study suggests that the chloroplast genome of A. hexapetalus provides valuable insights into its evolutionary history and will contribute to the conservation efforts of this species.

| S-EPMC10802805 | biostudies-literature

The complete chloroplast genome sequence of Polyalthiopsis verrucipes (Annonaceae).

Project description:Polyalthopsis Chaowasku is a recently newly described genus in Annonaceae. Polyalthopsis verrucipes (C.Y.Wu ex P.T.Li) B.Xue & Y.H.Tan is distributed in Southern Yunnan, China. In this article, we report the complete chloroplast (cp) genome of Polyalthiopsis based on Illumina sequencing data. The whole cp genome of this species is 159,965 bp in length, consisting of two inverted repeat regions (IR, 25,974 bp each), one large single-copy region (LSC, 89,030 bp), and one small single-copy region (SSC, 18,987 bp). A total of 130 genes were annotated for the cp genome, including 83 protein-coding genes, 37 tRNAs, and 8 rRNAs. Phylogenetic analysis indicated that P. verrucipes was closely related to Meiogyne hainanensis.

| S-EPMC8530470 | biostudies-literature

Artabotrys pilosus

Project description:Artabotrys pilosus Genome sequencing and assembly

| PRJNA764461 | ENA

Artabotrys pilosus

Project description:Artabotrys pilosus Genome sequencing and assembly

| PRJNA764462 | ENA

Artabotrys pilosus

Project description:Artabotrys pilosus Genome sequencing and assembly

| PRJNA764536 | ENA

Artabotrys pilosus

Project description:Artabotrys pilosus overview

| PRJNA766130 | ENA

The complete chloroplast genome of Uvaria macrophylla Roxb. (Annonaceae).

Project description:Uvaria macrophylla (Annonaceae) is an erect shrub with multiple medicinal properties. In this study, we report the complete chloroplast genome of U. macrophylla, assembled from whole-genome high-throughput sequencing reads, as a resource for future studies on the phylogeny and evolution of Annonaceae. The chloroplast genome was 192,782 bp in length, with a large single-copy (LSC) region of 83,581 bp, a small single-copy (SSC) region of 3,741 bp, separated by two inverted repeat (IR) regions of 52,730 bp each. It was predicted to contain 151 genes, with an overall GC content of 38.7%. Phylogenetic analysis of 105 protein-coding sequences of 13 plant plastomes showed that U. macrophylla is closest to Annona cherimola.

| S-EPMC7706897 | biostudies-literature

Artabotrys pachypetalus (Annonaceae), a new species from China.

Project description:Artabotrys pachypetalus sp. nov. is described from Guangdong, Guangxi, Guizhou, Hunan and Jiangxi in China. A detailed description, distribution data, along with a color plate and a line drawing are provided. In China, specimens representing this species were formerly misidentified as A. multiflorus or A. hongkongensis (= A. blumei). Artabotrys blumei typically has a single flower per inflorescence, whereas both Artabotrys pachypetalus and A. multiflorus have multiple flowers per inflorescence. In addition, A. pachypetalus is readily distinguished from A. multiflorus in having thicker and shorter petals, and connivent and somewhat trigonal or terete inner petal blades. Artabotrys pachypetalus is most similar to A. punctulatus because both have multi-flowered inflorescences and similar petal length, but A. pachypetalus differs in having cream petals in vivo, connivent inner petal blades, and a short, raised rim above the inner petal claw. Artabotrys multiflorus should be excluded from the flora of China because none of the Chinese specimens of Artabotrys collected so far fall within the variation of A. multiflorus.

| S-EPMC8175324 | biostudies-literature

New species and new records of Artabotrys (Annonaceae) from peninsular Thailand.

Project description:Two new species of Artabotrys (Annonaceae) are described from peninsular Thailand. Artabotrys longipetalus J.Chen & Eiadthong, sp. nov., is unique among Artabotrys species in Thailand in having linear petals, relatively long flower pedicels and sessile monocarps. Artabotrys insurae J.Chen & Eiadthong, sp. nov., resembles Artabotrys uniflorus (Griff.) Craib, but can be distinguished by its oblique leaf base, flat petal blades, apiculate anther connective apex and the presence of a monocarp stipe. In addition, two new records for the Flora of Thailand are reported, viz. Artabotrys crassifolius Hook.f. & Thomson and Artabotrys pleurocarpus Maingay ex Hook.f. & Thomson; both species are so far only known from peninsular Thailand. A key to the 20 species of Artabotrys in Thailand is provided.

| S-EPMC7314862 | biostudies-literature

Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar.

Project description:Fenerivia ghesquiereana (Cavaco & Keraudren) R.M.K. Saunders (Annaonaceae) is a rare and endemic tree restricted to the warm tropical forests of Madagascar, a major global hotspot for biodiversity. Species in the genus are mostly restricted to a thin belt along the eastern edge of the island and remain under intense pressure due to deforestation for logging, mining and slash-and-burn agriculture ('tavy'), despite national pledges to curb biodiversity losses and increase park protection to combat illegal logging and poaching. Here we report the complete chloroplast genome sequence of this species to support ongoing efforts to complete the (sub-)tribal classification of the family. The chloroplast sequence of F. ghesquiereana was 160,194 bp in length, including two inverted repeat regions of 26,093 bp, a large single-copy region of 89,041 bp and a small single-copy region of 18,967 bp. A total of 160 genes were annotated, of which 115 are coding, 37 are tRNA genes, and eight are rRNA genes. The overall GC content was 39%; this was higher in the IRs (43.4%) when compared to the LSC (30.7%) and the SSC (33.9%) regions. A Maximum Likelihood phylogenetic analysis with a selection of other plastomes in Annonaceae placed F. ghesquiereana as sister to Meiogyne hainanensis (Merr.) in subfamily Malmeoideae.

| S-EPMC7836981 | biostudies-literature