Glacial and postglacial sedimentary infill in Slovakian High Tatra Mts. lakes: Acoustic survey and lithological data.
Ontology highlight
ABSTRACT:
SUBMITTER: Dhavamani R
PROVIDER: S-EPMC8713125 | biostudies-literature |
REPOSITORIES: biostudies-literature
Similar Datasets
Project description:The article provides a data on 160 samples of bottom sediments obtained from 48 stations during 60th cruise of R/V Akademik Oparin in the East Siberian Sea in Autumn 2020 (26 September - 11 November). It contains mean diameter of the particles, sorting coefficient, standard deviation, skewness, and kurtosis, values of percentiles (p5, p10, p16, p25, p50, p75, p84, p90, p95), lithology and mass percentage of >2 mm, 1-2 mm, 0.5-1 mm, 250-500 µm, 125-250 µm, 63-125 µm, 31-63 µm, 10-31 µm, 2-10 µm, and <2 µm fractions. The bottom sediments have been sampled in Chaun Bay of the East Siberian Sea from 9 to 21 October 2020 with Ekman (0.25 m2) and Van Veen (0.05 m2) samplers. The grain size data was obtained from laser diffraction method using a SHIMADZU SALD 2300 particle analyser. The data provides an overview on lithology and grain size properties of bottom sediments that will be useful to understand risks for climate changes in the Arctic. The data will help the researchers who work on the Arctic to assess a relationship between grain size properties of the bottom sediments and it sorption potential. A principal component analysis (PCA) can be performed to identify key parameters of the bottom sediments in assessment of sedimentation rates and it changes in the Arctic. Additionally, the data can be used in mapping a spatial distribution of above mentioned parameters for better understanding sedimentation rate changes in the East Siberian Sea and adjacent seas as well.
| S-EPMC9792350 | biostudies-literature
Project description:Although hedgehogs are well-known examples of postglacial recolonisation, the specific processes that shape their population structures have not been examined by detailed sampling and fast-evolving genetic markers in combination with model based clustering methods. This study aims to analyse the impacts of isolation within glacial refugia and of postglacial expansion on the population structure of the Northern White-breasted hedgehog (Erinaceus roumanicus). It also discusses the role of the processes at edges of species distribution in its evolutionary history. The maternally inherited mitochondrial control region and the bi-parentally inherited nuclear microsatellites were used to examine samples within the Central Europe, Balkan Peninsula and adjacent islands. Bayesian coalescent inference and neutrality tests proposed a recent increase in the population size. The most pronounced pattern of population structure involved differentiation of the insular populations in the Mediterranean Sea and the population within the contact zone with E. europaeus in Central Europe. An interspecies hybrid was detected for the first time in Central Europe. A low genetic diversity was observed in Crete, while the highest genetic distances among individuals were found in Romania. The recent population in the post-refugial area related to the Balkan Peninsula shows a complex pattern with pronounced subpopulations located mainly in the Pannonian Basin and at the Adriatic and Pontic coasts. Detailed analyses indicate that parapatry and peripatry may not be the only factors that limit range expansion, but also strong microevolutionary forces that may change the genetic structure of the species. Here we present evidence showing that population differentiation may occur not only during the glacial restriction of the range into the refugia, but also during the interglacial range expansion. Population differentiation at the Balkan Peninsula and adjacent regions could be ascribed to diversification in steppe/forest biomes and complicated geomorphology, including pronounced geographic barriers as Carpathians.
| S-EPMC5407276 | biostudies-literature
Project description:Heterogeneous glacier mass loss has occurred across High Mountain Asia on a multi-decadal timescale. Contrasting climatic settings influence glacier behaviour at the regional scale, but high intra-regional variability in mass loss rates points to factors capable of amplifying glacier recession in addition to climatic change along the Himalaya. Here we examine the influence of surface debris cover and glacial lakes on glacier mass loss across the Himalaya since the 1970s. We find no substantial difference in the mass loss of debris-covered and clean-ice glaciers over our study period, but substantially more negative (-0.13 to -0.29 m w.e.a-1) mass balances for lake-terminating glaciers, in comparison to land-terminating glaciers, with the largest differences occurring after 2000. Despite representing a minor portion of the total glacier population (~10%), the recession of lake-terminating glaciers accounted for up to 32% of mass loss in different sub-regions. The continued expansion of established glacial lakes, and the preconditioning of land-terminating glaciers for new lake development increases the likelihood of enhanced ice mass loss from the region in coming decades; a scenario not currently considered in regional ice mass loss projections.
| S-EPMC6889251 | biostudies-literature
Project description:BACKGROUND:Pleistocene glaciations have had an important impact on the species distribution and community composition of the North American biota. Species survived these glacial cycles south of the ice sheets and/or in other refugia, such as Beringia. In this study, we assessed, using mitochondrial DNA from three Diptera species, whether flies currently found in Beringian grasslands (1) survived glaciation as disjunct populations in Beringia and in the southern refugium; (2) dispersed northward postglacially from the southern refugium; or (3) arose by a combination of the two. Samples were collected in grasslands in western Canada: Prairies in Alberta and Manitoba; the Peace River region (Alberta); and the southern Yukon Territory. We sequenced two gene regions (658 bp of cytochrome c oxidase subunit I, 510 bp of cytochrome b) from three species of higher Diptera: one with a continuous distribution across grassland regions, and two with disjunct populations between the regions. We used a Bayesian approach to determine population groupings without a priori assumptions and performed analysis of molecular variance (AMOVA) and exact tests of population differentiation (ETPD) to examine their validity. Molecular dating was used to establish divergence times. RESULTS:Two geographically structured populations were found for all species: a southern Prairie and Peace River population, and a Yukon population. Although AMOVA did not show significant differentiation between populations, ETPD did. Divergence time between Yukon and southern populations predated the Holocene for two species; the species with an ambiguous divergence time had high haplotype diversity, which could suggest survival in a Beringian refugium. CONCLUSIONS:Populations of Diptera in Yukon grasslands could have persisted in steppe habitats in Beringia through Pleistocene glaciations. Current populations in the region appear to be a mix of Beringian relict populations and, to a lesser extent, postglacial dispersal northward from southern prairie grasslands.
| S-EPMC6923875 | biostudies-literature
Project description:Diatom analysis was undertaken on a 200-year sediment record in an alpine lake (Popradské pleso, Tatra Mountains, Central Europe). Due to its remote character and well-documented human influence since the mid-nineteenth century, it allows a study of the relationship between anthropogenic pressures and diatom assemblages. Altogether, 122 diatom taxa of 40 genera were identified, and two major taxonomic shifts were revealed in the stratigraphic record. The timing of the first significant shift in ~?1850 precludes the possibility of being caused by direct human activities, since according to historic documents there was neither continuous human presence nor grazing in the valley before that time. In addition, the direct effect of organic pollution early in the 1960s connected with the operation of a tourist hotel was not clearly reflected in the diatom signal. The diatom-inferred total phosphorus (DI-TP) reconstruction indicated the highest TP content well before the most direct wastewater pollution from a newly built hotel. There was a considerable effect of climate to diatom assemblage structure as well as diatom life forms. Our results suggest that direct organic pollution influenced the diatom communities less than expected, and the main driver of change was climate warming. We hypothesize that it is because of the short residence time of the lake, since it has both strong inlet and outlet, and it has been showed that the inlet had significant effect on benthic communities in the past. At the same time, fish manipulation could have been the reason for some fluctuation in DI-TP unrelated to climate and organic pollution.
| S-EPMC6096542 | biostudies-literature
Project description:Three sediment cores from Lake Ontario, Lake Erie and Indiana Harbor Ship Canal were collected, segmented and analyzed for Aroclor and non-Aroclor polychlorinated biphenyl congeners (PCBs). PCBs associated with the commercially produced Aroclor mixtures 1248 and 1254 dominate the sediment signal and the sum of all congeners (?PCB) peaks in concentration and accumulation around 1970 in the Great Lakes. This trend is very similar to Aroclor production history. In the Indiana Harbor Ship Canal, PCBs appear around 1935 and remain at very high levels between 1940 and 1980, probably reflecting the history of use at the nearby steel mill. In contrast, the non-Aroclor PCBs in the Lake Ontario and IHSC sediment cores, including PCB11 and heavily chlorinated congeners PCB206, 207, 208 and 209 reach a peak in the 1950s, decline and peak again in the 1970s or in the early 1980s. All five congeners have been previously measured in commercial paint pigment. PCB11 was found to peak about 5 years later than ?PCBs, and is probably associated with the production or use history of diarylide yellow pigments. The temporal distribution profiles of these non-Aroclor PCBs are well correlated with the production history of paint pigments and dyes. Although it is well known that the production of Aroclor PCBs is preserved in Great Lakes sediments, this study is the first to show that production of non-Aroclors are also preserved in the sediments as a record of long term trends in environmental exposure.
| S-EPMC3607302 | biostudies-literature
Project description:We reconstructed cyanobacterial community structure and phylogeny using DNA that was isolated from layers of stratified sediments spanning 200 years of lake history in the perialpine lakes Greifensee and Lake Zurich (Switzerland). Community analysis based on amplification and sequencing of a 400-nucleotide (nt)-long 16S rRNA fragment specific to Cyanobacteria revealed operational taxonomic units (OTUs) capturing the whole phylum, including representatives of a newly characterized clade termed Melainabacteria, which shares common ancestry with Cyanobacteria and has not been previously described in lakes. The reconstruction of cyanobacterial richness and phylogenetic structure was validated using a data set consisting of 40 years of pelagic microscopic counts from each lake. We identified the OTUs assigned to common taxa known to be present in Greifensee and Lake Zurich and found a strong and significant relationship (adjusted R2 = 0.89; P < 0.001) between pelagic species richness in water and OTU richness in the sediments. The water-sediment richness relationship varied between cyanobacterial orders, indicating that the richness of Chroococcales and Synechococcales may be underestimated by microscopy. PCR detection of the microcystin synthetase gene mcyA confirmed the presence of potentially toxic cyanobacterial taxa over recent years in Greifensee and throughout the last century in Lake Zurich. The approach presented in this study demonstrates that it is possible to reconstruct past pelagic cyanobacterial communities in lakes where the integrity of the sedimentary archive is well preserved and to explore changes in phylogenetic and functional diversity over decade-to-century timescales.ImportanceCyanobacterial blooms can produce toxins that affect water quality, especially under eutrophic conditions, which are a consequence of human-induced climate warming and increased nutrient availability. Lakes worldwide have suffered from regular cyanobacterial blooms over the last century. The lack of long-term data limits our understanding of how these blooms form. We successfully reconstructed the past diversity of whole cyanobacterial communities over two hundred years by sequencing genes preserved in the sediments of two perialpine lakes in Switzerland. We identified changes in diversity over time and validated our results using existing data collected in the same two lakes over the past 40 years. This work shows the potential of our approach for addressing important ecological questions about the effects of a changing environment on lake ecology.
| S-EPMC5066364 | biostudies-literature
Project description:Climate change is expected to cause major shifts in boreal forests which are in vast areas of Siberia dominated by two species of the deciduous needle tree larch (Larix). The species differ markedly in their ecosystem functions, thus shifts in their respective ranges are of global relevance. However, drivers of species distribution are not well understood, in part because paleoecological data at species level are lacking. This study tracks Larix species distribution in time and space using target enrichment on sedimentary ancient DNA extracts from eight lakes across Siberia. We discovered that Larix sibirica, presently dominating in western Siberia, likely migrated to its northern distribution area only in the Holocene at around 10,000 years before present (ka BP), and had a much wider eastern distribution around 33 ka BP. Samples dated to the Last Glacial Maximum (around 21 ka BP), consistently show genotypes of L. gmelinii. Our results suggest climate as a strong determinant of species distribution in Larix and provide temporal and spatial data for species projection in a changing climate.
| S-EPMC9184489 | biostudies-literature
Project description:Sulfate reduction is an important biogeochemical process in the ecosphere; however, the major taxa of sulfate reducers have not been fully identified. Here, we used epicPCR (Emulsion, Paired Isolation, and Concatenation PCR) technology to identify the phylogeny of sulfate-reducing prokaryotes (SRP) in sediments from Tibetan Plateau saline lakes. A total of 12,519 OTUs and 883 SRP-OTUs were detected in ten lakes by sequencing of 16S rRNA gene PCR amplicons and epicPCR products of fused 16S rRNA plus dsrB gene, respectively, with Proteobacteria, Firmicutes, and Bacteroidetes being the dominant phyla in both datasets. The 120 highly abundant SRP-OTUs (>?1% in at least one sample) were affiliated with 17 described phyla, only 7 of which are widely recognized as SRP phyla. The majority of OTUs from both the whole microbial communities and the SRPs were not detected in more than one specific lake, suggesting high levels of endemism. The ?-diversity of the entire microbial community and SRP sub-community showed significant positive correlations. The pH value and mean water temperature of the month prior to sampling were the environmental determinants for the whole microbial community, while the mean water temperature and total nitrogen were the major environmental drivers for the SRP sub-community. This study revealed there are still many undocumented SRP in Tibetan saline lakes, many of which could be endemic and adapted to specific environmental conditions.
| S-EPMC6500586 | biostudies-literature
Project description:BackgroundPlant diversity in the Arctic and at high altitudes strongly depends on and rebounds to climatic and environmental variability and is nowadays tremendously impacted by recent climate warming. Therefore, past changes in plant diversity in the high Arctic and high-altitude regions are used to infer climatic and environmental changes through time and allow future predictions. Sedimentary DNA (sedDNA) is an established proxy for the detection of local plant diversity in lake sediments, but still relationships between environmental conditions and preservation of the plant sedDNA proxy are far from being fully understood. Studying modern relationships between environmental conditions and plant sedDNA will improve our understanding under which conditions sedDNA is well-preserved helping to a.) evaluate suitable localities for sedDNA approaches, b.) provide analogues for preservation conditions and c.) conduct reconstruction of plant diversity and climate change. This study investigates modern plant diversity applying a plant-specific metabarcoding approach on sedimentary DNA of surface sediment samples from 262 lake localities covering a large geographical, climatic and ecological gradient. Latitude ranges between 25°N and 73°N and longitude between 81°E and 161°E, including lowland lakes and elevated lakes up to 5168 m a.s.l. Further, our sampling localities cover a climatic gradient ranging in mean annual temperature between -15°C and +18°C and in mean annual precipitation between 36- and 935 mm. The localities in Siberia span over a large vegetational gradient including tundra, open woodland and boreal forest. Lake localities in China include alpine meadow, shrub, forest and steppe and also cultivated areas. The assessment of plant diversity in the underlying dataset was conducted by a specific plant metabarcoding approach.New informationWe provide a large dataset of genetic plant diversity retrieved from surface sedimentary DNA from lakes in Siberia and China spanning over a large environmental gradient. Our dataset encompasses sedDNA sequence data of 259 surface lake sediments and three soil samples originating from Siberian and Chinese lakes. We used the established chloroplastidal P6 loop trnL marker for plant diversity assessment. The merged, filtered and assigned dataset includes 15,692,944 read counts resulting in 623 unique plant DNA sequence types which have a 100% match to either the EMBL or to the specific Arctic plant reference database. The underlying dataset includes a taxonomic list of identified plants and results from PCR replicates, as well as extraction blanks (BLANKs) and PCR negative controls (NTCs), which were run along with the investigated lake samples. This collection of plant metabarcoding data from modern lake sediments is still ongoing and additional data will be released in the future.
| S-EPMC7752886 | biostudies-literature